BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0565600 Os10g0565600|AK103864
(844 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0565600 Zinc finger, RING-type domain containing protein 1444 0.0
Os04g0550400 Conserved hypothetical protein 85 2e-16
>Os10g0565600 Zinc finger, RING-type domain containing protein
Length = 844
Score = 1444 bits (3737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 733/844 (86%), Positives = 733/844 (86%)
Query: 1 MDAAALQYENQKLVQQLEAQKSKMRALEGKFKELRDEQCSYDNTLICLNKMWNQLIDDLV 60
MDAAALQYENQKLVQQLEAQKSKMRALEGKFKELRDEQCSYDNTLICLNKMWNQLIDDLV
Sbjct: 1 MDAAALQYENQKLVQQLEAQKSKMRALEGKFKELRDEQCSYDNTLICLNKMWNQLIDDLV 60
Query: 61 LLGVRAGGDLNGLQALDHXXXXXXXXXXXXXXXIXXXXXXXXXXXXXXXXXXXXKLVEEA 120
LLGVRAGGDLNGLQALDH I KLVEEA
Sbjct: 61 LLGVRAGGDLNGLQALDHEEMSEESLESCPSEEIFLFRLLNSRNFRNNDDSSLSKLVEEA 120
Query: 121 LALRYSTTVTLMKSLQEAFAVQQARSESLSLALNGQNSSEDVIVALENHNDYLKEVVDNL 180
LALRYSTTVTLMKSLQEAFAVQQARSESLSLALNGQNSSEDVIVALENHNDYLKEVVDNL
Sbjct: 121 LALRYSTTVTLMKSLQEAFAVQQARSESLSLALNGQNSSEDVIVALENHNDYLKEVVDNL 180
Query: 181 RQAVSIINRKHEKYLDEIEAFKNNQSRELHEVKCXXXXXXXXXXXXXXXRRKLAVLQLQT 240
RQAVSIINRKHEKYLDEIEAFKNNQSRELHEVKC RRKLAVLQLQT
Sbjct: 181 RQAVSIINRKHEKYLDEIEAFKNNQSRELHEVKCLSGELEESMAELEESRRKLAVLQLQT 240
Query: 241 GGGSLMNTSAPNGVNGSVSTDKSSDKGMGWRDLKDAVEEAKTLAANRLFELHETQEDNLI 300
GGGSLMNTSAPNGVNGSVSTDKSSDKGMGWRDLKDAVEEAKTLAANRLFELHETQEDNLI
Sbjct: 241 GGGSLMNTSAPNGVNGSVSTDKSSDKGMGWRDLKDAVEEAKTLAANRLFELHETQEDNLI 300
Query: 301 LSKQLEDIQDQLKDENYIVTSKPYTILSDQLHHLNAEIERYRGLVEVLQNEKDQLMQKEE 360
LSKQLEDIQDQLKDENYIVTSKPYTILSDQLHHLNAEIERYRGLVEVLQNEKDQLMQKEE
Sbjct: 301 LSKQLEDIQDQLKDENYIVTSKPYTILSDQLHHLNAEIERYRGLVEVLQNEKDQLMQKEE 360
Query: 361 EMLAKAESVDAVQQSITTYKAKIEDLEHEIQKLMAEKNDLEIKAEEALQDSGKKDFKDEI 420
EMLAKAESVDAVQQSITTYKAKIEDLEHEIQKLMAEKNDLEIKAEEALQDSGKKDFKDEI
Sbjct: 361 EMLAKAESVDAVQQSITTYKAKIEDLEHEIQKLMAEKNDLEIKAEEALQDSGKKDFKDEI 420
Query: 421 HVMAASLSKEMELLDNQMNRSKDXXXXXXXXXXXXDYLRTLLAKKIDEQKEISDRYNTQV 480
HVMAASLSKEMELLDNQMNRSKD DYLRTLLAKKIDEQKEISDRYNTQV
Sbjct: 421 HVMAASLSKEMELLDNQMNRSKDAASEALALREEADYLRTLLAKKIDEQKEISDRYNTQV 480
Query: 481 TEIKSLKALIETLDQEKQELQFIVDMLGKXXXXXXXXXXXXXXXNRARKQAEYLRKCLEE 540
TEIKSLKALIETLDQEKQELQFIVDMLGK NRARKQAEYLRKCLEE
Sbjct: 481 TEIKSLKALIETLDQEKQELQFIVDMLGKECSESRAISEIEESENRARKQAEYLRKCLEE 540
Query: 541 HNLELRVKAANEAETACQQRLSIAEAELEDLRAKVDASERDVMKLKESIRIKEAEVDGHI 600
HNLELRVKAANEAETACQQRLSIAEAELEDLRAKVDASERDVMKLKESIRIKEAEVDGHI
Sbjct: 541 HNLELRVKAANEAETACQQRLSIAEAELEDLRAKVDASERDVMKLKESIRIKEAEVDGHI 600
Query: 601 SEIETIGQAYEDMQTQNQHLLQQVADRDDFNIKLVSDSVKMKQAYGSLLAEKNMLQKQLQ 660
SEIETIGQAYEDMQTQNQHLLQQVADRDDFNIKLVSDSVKMKQAYGSLLAEKNMLQKQLQ
Sbjct: 601 SEIETIGQAYEDMQTQNQHLLQQVADRDDFNIKLVSDSVKMKQAYGSLLAEKNMLQKQLQ 660
Query: 661 HVNSSLESSKLKITSGEEQMKTYVAQAMKSSSENRHLAISLERTMLEVSDAEKELKWLRS 720
HVNSSLESSKLKITSGEEQMKTYVAQAMKSSSENRHLAISLERTMLEVSDAEKELKWLRS
Sbjct: 661 HVNSSLESSKLKITSGEEQMKTYVAQAMKSSSENRHLAISLERTMLEVSDAEKELKWLRS 720
Query: 721 ATGSAEKEYEINQKKIAELKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIQKLQ 780
ATGSAEKEYEINQKKIAELKM IQKLQ
Sbjct: 721 ATGSAEKEYEINQKKIAELKMELERERNERIKLEEEYEEVKNEVSELTSETEETTIQKLQ 780
Query: 781 DEIKECKAILKCGVCFDRPKEVVITKCFHLFCSPCIQRNLEIRHRKCPGCGTPFGQSDVR 840
DEIKECKAILKCGVCFDRPKEVVITKCFHLFCSPCIQRNLEIRHRKCPGCGTPFGQSDVR
Sbjct: 781 DEIKECKAILKCGVCFDRPKEVVITKCFHLFCSPCIQRNLEIRHRKCPGCGTPFGQSDVR 840
Query: 841 EVKI 844
EVKI
Sbjct: 841 EVKI 844
>Os04g0550400 Conserved hypothetical protein
Length = 489
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 134/263 (50%), Gaps = 2/263 (0%)
Query: 182 QAVSIINRKHEKYLDEIEAFKNNQSRELHEVKCXXXXXXXXXXXXXXXRRKLAVLQLQTG 241
QA+S + KH++ ++ + +++ +R+ E + KLA L+ Q
Sbjct: 200 QALSNLQLKHKQLAEDYQNQRDSSARKRAEHRRLKEELASAASELEETNYKLAALKAQRD 259
Query: 242 GGSLMNTSAPNGVNGSVSTDKSSDKGMGWRDLKDAVEEAKTLAANRLFELHETQEDNLIL 301
P N ++ DK DK +DL+ +E L + RL E+ E+ + +
Sbjct: 260 NTQGARIPYPTLGNKNMPEDKVRDKQREMQDLEATHKELSELISKRLVEIKRLHEERIEI 319
Query: 302 SKQLEDIQDQLKDENYIVTSKPYTILSDQLHHLNAEIERYRGLVEVLQNEKDQLMQKEEE 361
++ Q+ L D I +SK + +++D+L AE++ Y+ L+E LQ +KD+ + +E +
Sbjct: 320 LNKIATFQNILMDFKSIRSSKAFQLVNDRLQKSQAELDHYQTLLEKLQVDKDKFVWQERQ 379
Query: 362 MLAKAESVDAVQQSITTY-KAKIEDLEHEIQKLMAEKNDLEIKAEEALQDSGKKDFKDEI 420
K + + + + ++TY ++ I DL+ +IQKL EKN L +K EEA ++ G+ +
Sbjct: 380 FNLKVDLAE-IPERVSTYCESSIADLKKDIQKLCDEKNMLILKLEEASREPGRNQVITKF 438
Query: 421 HVMAASLSKEMELLDNQMNRSKD 443
+ +S+ +EM + ++M + K+
Sbjct: 439 KALVSSIPREMGAMQSEMTKHKE 461
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.128 0.341
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,075,559
Number of extensions: 690041
Number of successful extensions: 3400
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 3389
Number of HSP's successfully gapped: 3
Length of query: 844
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 735
Effective length of database: 11,344,475
Effective search space: 8338189125
Effective search space used: 8338189125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 160 (66.2 bits)