BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0564200 Os10g0564200|AK072487
         (336 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0564200  Homeodomain-like containing protein                 327   8e-90

>Os10g0564200 Homeodomain-like containing protein
          Length = 336

 Score =  327 bits (838), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 174/256 (67%), Positives = 174/256 (67%)

Query: 52  CWTHEETLALIEAYRDRWEGLRKGNLRASDWDDVAGAVTARCGRFPTATHKSGVQCRHKI 111
           CWTHEETLALIEAYRDRWEGLRKGNLRASDWDDVAGAVTARCGRFPTATHKSGVQCRHKI
Sbjct: 52  CWTHEETLALIEAYRDRWEGLRKGNLRASDWDDVAGAVTARCGRFPTATHKSGVQCRHKI 111

Query: 112 EKLXXXXXXXXXXXXXXSKGPKWPFFPLLHDLAGGGAPDPSPNPIIKIKSKGXXXXXXXX 171
           EKL              SKGPKWPFFPLLHDLAGGGAPDPSPNPIIKIKSKG        
Sbjct: 112 EKLRKRYRAERARAAGRSKGPKWPFFPLLHDLAGGGAPDPSPNPIIKIKSKGPAAAAASP 171

Query: 172 XXXXXXXXXXXXXXXXXXXXXXXXXGRSRXXXXXXXXXXXXXXXRFTIPKASRSKPVAQR 231
                                    GRSR               RFTIPKASRSKPVAQR
Sbjct: 172 SPASPSPVSSPSSEEDEEEEAAADAGRSRSLHGLISNGGSGSGLRFTIPKASRSKPVAQR 231

Query: 232 EQPTAIXXXXXXXXXXXXXXXXXXXXLRAVGDKFLRMEERRLEISLQIEKERMESEMKRT 291
           EQPTAI                    LRAVGDKFLRMEERRLEISLQIEKERMESEMKRT
Sbjct: 232 EQPTAIKVEKSEEDAEAEAMAEVASALRAVGDKFLRMEERRLEISLQIEKERMESEMKRT 291

Query: 292 QTLLDAQQLFVEAFLG 307
           QTLLDAQQLFVEAFLG
Sbjct: 292 QTLLDAQQLFVEAFLG 307



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.134    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,283,052
Number of extensions: 184277
Number of successful extensions: 685
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 687
Number of HSP's successfully gapped: 2
Length of query: 336
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 235
Effective length of database: 11,762,187
Effective search space: 2764113945
Effective search space used: 2764113945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)