BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0554900 Os10g0554900|AK120846
         (369 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0554900  Protein of unknown function DUF566 family protein   416   e-116

>Os10g0554900 Protein of unknown function DUF566 family protein
          Length = 369

 Score =  416 bits (1070), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/369 (60%), Positives = 223/369 (60%)

Query: 1   MESNGVGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVYDGMRPAPLFSSTNFARSLRK 60
           MESNGVGGG                            FVYDGMRPAPLFSSTNFARSLRK
Sbjct: 1   MESNGVGGGAARPLTASRRLLARSASTTASRAGGAGAFVYDGMRPAPLFSSTNFARSLRK 60

Query: 61  AASFGGGGKKQYSXXXXXXXXXXXXXXXXXXLSSKENTVHELGTAAARGPWEPAXXXXXX 120
           AASFGGGGKKQYS                  LSSKENTVHELGTAAARGPWEPA      
Sbjct: 61  AASFGGGGKKQYSADDDGAVAVKAAAPPRRALSSKENTVHELGTAAARGPWEPARRPRRS 120

Query: 121 XXXXXXXXENAGSTRGSAVLRDMMTXXXXXXXXXXXXXXXXXXXXXXXQWRFANXXXXXX 180
                   ENAGSTRGSAVLRDMMT                       QWRFAN      
Sbjct: 121 SSGGSSSPENAGSTRGSAVLRDMMTRRKEEPEKEEAAHRARMLAARLLQWRFANARMEKA 180

Query: 181 XXXXXXXXXNKLFYTWLRVAELRNIQAAKRIVXXXXXXXXXXXXXXXXXXXXXXXWDSLA 240
                    NKLFYTWLRVAELRNIQAAKRIV                       WDSLA
Sbjct: 181 MARATAAAENKLFYTWLRVAELRNIQAAKRIVAQRRRQKLKLARLLRPQLSLLASWDSLA 240

Query: 241 KPHXXXXXXXXXXXXXXCTALPLADGAQGDMESLHEAMFACVGTVNDIEANADMFFATAG 300
           KPH              CTALPLADGAQGDMESLHEAMFACVGTVNDIEANADMFFATAG
Sbjct: 241 KPHADAVDDLGAVLAAACTALPLADGAQGDMESLHEAMFACVGTVNDIEANADMFFATAG 300

Query: 301 VXXXXXXXXXXXIKQEVEGLQEAMKLARIVTSLQVQEVSLRANLIQIQAKQKVDMGASVP 360
           V           IKQEVEGLQEAMKLARIVTSLQVQEVSLRANLIQIQAKQKVDMGASVP
Sbjct: 301 VTSSTLEELSTTIKQEVEGLQEAMKLARIVTSLQVQEVSLRANLIQIQAKQKVDMGASVP 360

Query: 361 AIATSGWCF 369
           AIATSGWCF
Sbjct: 361 AIATSGWCF 369



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.130    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,583,419
Number of extensions: 149893
Number of successful extensions: 244
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 267
Effective length of database: 11,709,973
Effective search space: 3126562791
Effective search space used: 3126562791
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)