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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0554900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF566 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.8 (0.076) R2 : 0.566
β1 : -5.66 (0.268) R2dD : 0.494 R2D : 0.442
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.45 (0.354) R2dE : 0.0262 R2E : 0.0308
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 7.58 (1.28) R2dD*E : 0.0394 R2D*E : -0.0346
γ1 : -1.61 (0.176) R2dN8 : 0.152 R2N8 : -0.0432
σ : 1.29
deviance : 770.37
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 5.629
memory length : 4285
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 2.49
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
757.17 1.29 4.79 -5.7 0.368 -1.46 1.55 7.67 -1.63 6.44 5.514 4286 2.65 --
813.15 1.33 4.93 -5.48 0.192 -1.61 1.49 -- -1.55 7.76 22.88 4286 2.31 --
761.95 1.29 4.79 -5.68 0.441 -1.46 -- 7.59 -1.65 5.39 5.449 4346 2.57 --
819.03 1.33 4.93 -5.48 0.232 -1.57 -- -- -1.55 7.4 24.93 4290 2.43 --
770.37 1.29 4.8 -5.66 -- -1.45 -- 7.58 -1.61 -- 5.629 4285 2.49 --
844.54 1.36 4.84 -5.86 0.334 -- 1.44 -- -1.2 6.88 -- -- -- --
848.43 1.36 4.85 -5.84 0.378 -- -- -- -1.2 5.27 -- -- -- --
820.55 1.33 4.93 -5.46 -- -1.63 -- -- -1.53 -- 34.5 4285 1.45 --
1520.12 1.82 4.95 -- 0.412 -4 -- -- -1.68 5.71 45.94 4320 2 --
855.9 1.37 4.85 -5.83 -- -- -- -- -1.2 -- -- -- -- --
1747.42 1.96 4.7 -- 0.284 -- -- -- -0.554 6.06 -- -- -- --
1500.75 1.8 4.92 -- -- -4.06 -- -- -1.5 -- 57.14 4312 9.43e-07 --
1751.62 1.95 4.71 -- -- -- -- -- -0.549 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 707.34 humidity 90.0 14400 < th dose independent rect. 2 4
3 709.12 humidity 90.0 14400 > th dose independent rect. 4 2
5 711.69 humidity 90.0 14400 > th dose independent rect. 1 5
10 723.84 humidity 80.0 14400 > th dose dependent rect. 3 2
17 727.05 humidity 80.0 14400 > th dose dependent rect. 1 4
20 730.43 wind 1.0 43200 > th dose independent rect. 16 16
28 733.27 wind 1.0 43200 < th dose independent rect. 17 18
33 734.37 wind 1.0 14400 > th dose independent rect. 1 3
44 737.29 humidity 50.0 14400 > th dose dependent rect. 2 3
54 739.02 humidity 50.0 14400 > th dose dependent rect. 3 1
62 739.34 wind 1.0 43200 < th dose independent rect. 13 17
65 739.76 wind 1.0 43200 > th dose independent sin 11 NA
69 740.17 wind 1.0 43200 < th dose independent rect. 15 15
84 741.62 wind 1.0 43200 > th dose independent rect. 21 13
91 742.01 wind 1.0 43200 < th dose independent rect. 20 15
93 742.08 wind 1.0 14400 < th dose independent rect. 1 9
97 742.34 wind 1.0 14400 < th dose independent rect. 1 3
126 744.65 wind 1.0 14400 < th dose dependent rect. 2 8
132 745.01 radiation 40.0 43200 > th dose independent rect. 7 1
148 745.01 radiation 40.0 43200 > th dose dependent rect. 7 1
169 745.50 wind 1.0 43200 < th dose independent sin 9 NA
176 745.99 wind 1.0 14400 > th dose independent rect. 1 9
190 746.86 wind 7.0 4320 < th dose dependent rect. 22 12
193 746.97 wind 1.0 4320 > th dose dependent rect. 22 12
196 747.18 wind 1.0 14400 < th dose dependent rect. 2 6
202 747.34 wind 1.0 43200 < th dose dependent rect. 2 22
217 748.27 wind 1.0 14400 < th dose dependent rect. 2 15
236 749.23 wind 1.0 14400 < th dose independent rect. 22 10
256 750.02 wind 3.0 4320 > th dose independent rect. 21 13
292 751.35 wind 1.0 14400 < th dose dependent rect. 6 2
304 751.72 wind 3.0 4320 < th dose independent rect. 20 13
323 752.43 radiation 10.0 14400 < th dose dependent rect. 11 3
357 753.47 wind 1.0 43200 < th dose dependent rect. 12 20
372 754.04 wind 1.0 14400 < th dose independent rect. 1 17
401 754.93 wind 1.0 14400 < th dose dependent rect. 5 5
429 755.64 wind 3.0 4320 > th dose dependent rect. 8 1
449 756.02 wind 1.0 43200 < th dose dependent rect. 16 18
473 756.54 wind 1.0 14400 < th dose independent rect. 5 5
503 756.97 wind 1.0 14400 < th dose independent rect. 6 3
526 757.52 humidity 70.0 43200 < th dose dependent rect. 4 3
533 757.58 temperature 20.0 14400 < th dose independent rect. 16 2
544 757.78 wind 3.0 4320 > th dose independent sin 9 NA
548 757.85 temperature 20.0 14400 > th dose independent rect. 16 2
555 758.01 wind 1.0 14400 < th dose independent rect. 7 1
556 758.02 radiation 10.0 14400 > th dose independent rect. 11 1
560 758.13 humidity 60.0 43200 < th dose independent rect. 5 2
574 758.40 wind 5.0 4320 < th dose dependent sin 9 NA
613 758.99 humidity 90.0 14400 > th dose dependent rect. 12 3
638 759.53 wind 1.0 4320 > th dose dependent sin 9 NA
679 760.23 wind 7.0 4320 < th dose dependent rect. 5 4
734 760.96 wind 1.0 14400 < th dose independent rect. 22 21
738 761.02 atmosphere 995.0 43200 > th dose independent sin 9 NA
741 761.10 atmosphere 995.0 43200 < th dose independent sin 9 NA
743 761.10 wind 1.0 43200 < th dose dependent sin 6 NA
775 761.59 wind 1.0 43200 < th dose dependent rect. 22 13
779 761.63 temperature 20.0 14400 < th dose dependent rect. 17 3
781 761.64 atmosphere 995.0 43200 < th dose independent rect. 21 12
800 761.94 humidity 70.0 43200 < th dose independent rect. 1 6
801 761.96 atmosphere 995.0 43200 > th dose independent rect. 22 11
832 762.42 wind 1.0 4320 > th dose dependent rect. 22 1
837 762.47 atmosphere 995.0 43200 < th dose dependent sin 12 NA
862 762.80 wind 3.0 4320 > th dose independent rect. 5 4
871 762.87 wind 1.0 14400 < th dose dependent rect. 5 12
874 762.95 atmosphere 995.0 43200 > th dose independent rect. 3 5
875 762.95 wind 9.0 14400 > th dose dependent rect. 4 2
886 763.01 atmosphere 995.0 43200 < th dose independent rect. 3 5
905 763.21 wind 1.0 14400 > th dose independent rect. 1 18
907 763.21 atmosphere 995.0 43200 < th dose dependent rect. 2 6
924 763.45 temperature 15.0 14400 > th dose independent rect. 8 1
925 763.45 precipitation 0.1 14400 < th dose independent rect. 11 2
928 763.45 precipitation 0.1 14400 < th dose dependent rect. 11 2
939 763.62 temperature 15.0 14400 > th dose independent rect. 6 3
943 763.65 wind 1.0 43200 > th dose independent rect. 7 2