BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0553900 Os10g0553900|AK100717
(590 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0553900 Protein of unknown function DUF863, plant fami... 1162 0.0
>Os10g0553900 Protein of unknown function DUF863, plant family protein
Length = 590
Score = 1162 bits (3007), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/590 (96%), Positives = 571/590 (96%)
Query: 1 MHHVRSGLGSPDASSNSSKRKRGSCFAERNMDGRNSIRIKPDVSVRAREKCGGGGGHRYV 60
MHHVRSGLGSPDASSNSSKRKRGSCFAERNMDGRNSIRIKPDVSVRAREKCGGGGGHRYV
Sbjct: 1 MHHVRSGLGSPDASSNSSKRKRGSCFAERNMDGRNSIRIKPDVSVRAREKCGGGGGHRYV 60
Query: 61 IDLEKPATSDDDVEFVSYAGFGNRSQDRCYASAENCSTAVSSQLCVERNASRVSPGSVGS 120
IDLEKPATSDDDVEFVSYAGFGNRSQDRCYASAENCSTAVSSQLCVERNASRVSPGSVGS
Sbjct: 61 IDLEKPATSDDDVEFVSYAGFGNRSQDRCYASAENCSTAVSSQLCVERNASRVSPGSVGS 120
Query: 121 SDTLDCQSPIKPDNSESRHLLIDLNVPQEESLHVFYAPSQITCPTLVNSSSSHPGEFWNG 180
SDTLDCQSPIKPDNSESRHLLIDLNVPQEESLHVFYAPSQITCPTLVNSSSSHPGEFWNG
Sbjct: 121 SDTLDCQSPIKPDNSESRHLLIDLNVPQEESLHVFYAPSQITCPTLVNSSSSHPGEFWNG 180
Query: 181 SSNVYKKECXXXXXXXXXXXITVVAPSSAPDSSREVVAAYQFHDPKNLHGNIHARENSQH 240
SSNVYKKEC ITVVAPSSAPDSSREVVAAYQFHDPKNLHGNIHARENSQH
Sbjct: 181 SSNVYKKECGSGVGSSKGSSITVVAPSSAPDSSREVVAAYQFHDPKNLHGNIHARENSQH 240
Query: 241 EHAVDKLCGSSSQYFLPQQRFSVSSCGRNDSSLALQKSGDNHVACQSGQPPLAVHTELQH 300
EHAVDKLCGSSSQYFLPQQRFSVSSCGRNDSSLALQKSGDNHVACQSGQPPLAVHTELQH
Sbjct: 241 EHAVDKLCGSSSQYFLPQQRFSVSSCGRNDSSLALQKSGDNHVACQSGQPPLAVHTELQH 300
Query: 301 DTSIVISSGEEKVLFDLNVPAESIDMESTITSNSFRDKLVKNDGSEETVTDHSFSKRNGV 360
DTSIVISSGEEKVLFDLNVPAESIDMESTITSNSFRDKLVKNDGSEETVTDHSFSKRNGV
Sbjct: 301 DTSIVISSGEEKVLFDLNVPAESIDMESTITSNSFRDKLVKNDGSEETVTDHSFSKRNGV 360
Query: 361 HAETSIEERTVGEHHISVSKDGNTTFFQESINNEIDKAQSSDLISVSSKHLIAETPHVDN 420
HAETSIEERTVGEHHISVSKDGNTTFFQESINNEIDKAQSSDLISVSSKHLIAETPHVDN
Sbjct: 361 HAETSIEERTVGEHHISVSKDGNTTFFQESINNEIDKAQSSDLISVSSKHLIAETPHVDN 420
Query: 421 IVCPELRASPDGASSPQETLIGNCDKMVCIAAETLVSIFSSSACTTDCPGTDSQTAAEDV 480
IVCPELRASPDGASSPQETLIGNCDKMVCIAAETLVSIFSSSACTTDCPGTDSQTAAEDV
Sbjct: 421 IVCPELRASPDGASSPQETLIGNCDKMVCIAAETLVSIFSSSACTTDCPGTDSQTAAEDV 480
Query: 481 NDEPQHSLDSYEEIVLNVEEIRDDGESIPVIPPDKDGPSCGIKXXXXXXXXNFLREIMPR 540
NDEPQHSLDSYEEIVLNVEEIRDDGESIPVIPPDKDGPSCGIK NFLREIMPR
Sbjct: 481 NDEPQHSLDSYEEIVLNVEEIRDDGESIPVIPPDKDGPSCGIKLRRGRGLRNFLREIMPR 540
Query: 541 LVSLSRHEICDDLHAIGYEPRKTRSRKTFGAQGSSSTRGRPPKHRPTARK 590
LVSLSRHEICDDLHAIGYEPRKTRSRKTFGAQGSSSTRGRPPKHRPTARK
Sbjct: 541 LVSLSRHEICDDLHAIGYEPRKTRSRKTFGAQGSSSTRGRPPKHRPTARK 590
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.128 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,573,139
Number of extensions: 937389
Number of successful extensions: 2035
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2035
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 484
Effective length of database: 11,501,117
Effective search space: 5566540628
Effective search space used: 5566540628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 159 (65.9 bits)