BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0546300 Os10g0546300|AK103033
(1074 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0546300 Conserved hypothetical protein 2004 0.0
>Os10g0546300 Conserved hypothetical protein
Length = 1074
Score = 2004 bits (5193), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 978/1041 (93%), Positives = 978/1041 (93%)
Query: 34 APGPLVFLPLLLIQGGGMDLSRVGEKLLSSVRSARSLGLLXXXXXXXXXXXXXXXXXXXX 93
APGPLVFLPLLLIQGGGMDLSRVGEKLLSSVRSARSLGLL
Sbjct: 34 APGPLVFLPLLLIQGGGMDLSRVGEKLLSSVRSARSLGLLPPTPPPPASRPEVPARAAAA 93
Query: 94 XXXXXXXXXXXXHEKISLPSNSEDLVSIYGSNPQGHAVDELEEVFFQEEFDPIKYILQSI 153
HEKISLPSNSEDLVSIYGSNPQGHAVDELEEVFFQEEFDPIKYILQSI
Sbjct: 94 AAAARAIAGLPPHEKISLPSNSEDLVSIYGSNPQGHAVDELEEVFFQEEFDPIKYILQSI 153
Query: 154 PAEGDSSYFDKQSTLRLAQLDKIAERLSHHVMGHHEEMVKGMQLVMELEQDLKVANVICM 213
PAEGDSSYFDKQSTLRLAQLDKIAERLSHHVMGHHEEMVKGMQLVMELEQDLKVANVICM
Sbjct: 154 PAEGDSSYFDKQSTLRLAQLDKIAERLSHHVMGHHEEMVKGMQLVMELEQDLKVANVICM 213
Query: 214 NGRRHVSSSKNEVSRDLVVNVKSKKKQALLDVLPILTELRNAQDMQMELESFVEKENYFQ 273
NGRRHVSSSKNEVSRDLVVNVKSKKKQALLDVLPILTELRNAQDMQMELESFVEKENYFQ
Sbjct: 214 NGRRHVSSSKNEVSRDLVVNVKSKKKQALLDVLPILTELRNAQDMQMELESFVEKENYFQ 273
Query: 274 AFQLLPEYLQILENYSGLSSVQEMGRGIEAWLARTIQKLDTHLLGVCQTFHEESYLTVID 333
AFQLLPEYLQILENYSGLSSVQEMGRGIEAWLARTIQKLDTHLLGVCQTFHEESYLTVID
Sbjct: 274 AFQLLPEYLQILENYSGLSSVQEMGRGIEAWLARTIQKLDTHLLGVCQTFHEESYLTVID 333
Query: 334 AYALMGDIGGMAEKMQSFFLQEVLSQTHYVLKEMLEEEVGNNTQRNRFTYSDLCAQVPEP 393
AYALMGDIGGMAEKMQSFFLQEVLSQTHYVLKEMLEEEVGNNTQRNRFTYSDLCAQVPEP
Sbjct: 334 AYALMGDIGGMAEKMQSFFLQEVLSQTHYVLKEMLEEEVGNNTQRNRFTYSDLCAQVPEP 393
Query: 394 KLRPCLLRTFQSLFSLMCSYYTIMSFCPGVKSIESEGENSLTGRNNTSQSADESLGDSGR 453
KLRPCLLRTFQSLFSLMCSYYTIMSFCPGVKSIESEGENSLTGRNNTSQSADESLGDSGR
Sbjct: 394 KLRPCLLRTFQSLFSLMCSYYTIMSFCPGVKSIESEGENSLTGRNNTSQSADESLGDSGR 453
Query: 454 GHAAEMSDRTSSSDVSNPDTSTSGTDSPFYQLRTDAAKLVAHAFERGRRNLWQLAXXXXX 513
GHAAEMSDRTSSSDVSNPDTSTSGTDSPFYQLRTDAAKLVAHAFERGRRNLWQLA
Sbjct: 454 GHAAEMSDRTSSSDVSNPDTSTSGTDSPFYQLRTDAAKLVAHAFERGRRNLWQLATSRLS 513
Query: 514 XXXXXXXXXXXXXYQFLKNYEDLTIFILAGEAFCGFEASEFRQKLKGICLNYSVAFHRQN 573
YQFLKNYEDLTIFILAGEAFCGFEASEFRQKLKGICLNYSVAFHRQN
Sbjct: 514 VLLSSSVVFSTSTYQFLKNYEDLTIFILAGEAFCGFEASEFRQKLKGICLNYSVAFHRQN 573
Query: 574 IYALKMVLERESWTIMSAEASRIISLAGLTGDGAALISPTSRISTLPIHGSTMSDTGKEK 633
IYALKMVLERESWTIMSAEASRIISLAGLTGDGAALISPTSRISTLPIHGSTMSDTGKEK
Sbjct: 574 IYALKMVLERESWTIMSAEASRIISLAGLTGDGAALISPTSRISTLPIHGSTMSDTGKEK 633
Query: 634 NGFAAWTKIENPFFYKVENGTTESPKSNMMFNSVDNSSAHGSTNNGNGNKAPLDEENEDL 693
NGFAAWTKIENPFFYKVENGTTESPKSNMMFNSVDNSSAHGSTNNGNGNKAPLDEENEDL
Sbjct: 634 NGFAAWTKIENPFFYKVENGTTESPKSNMMFNSVDNSSAHGSTNNGNGNKAPLDEENEDL 693
Query: 694 LADFIDEDSQLPSRLAKTKIVKGNSSHWKDGDISSQTGSSLSLLRMMDKYARLMQKLEIV 753
LADFIDEDSQLPSRLAKTKIVKGNSSHWKDGDISSQTGSSLSLLRMMDKYARLMQKLEIV
Sbjct: 694 LADFIDEDSQLPSRLAKTKIVKGNSSHWKDGDISSQTGSSLSLLRMMDKYARLMQKLEIV 753
Query: 754 NVELFKGICQLFGIFYHYIYETFGNQDRGQSGKSLPDHQSFRLRVALSKITQDSDQWIKX 813
NVELFKGICQLFGIFYHYIYETFGNQDRGQSGKSLPDHQSFRLRVALSKITQDSDQWIK
Sbjct: 754 NVELFKGICQLFGIFYHYIYETFGNQDRGQSGKSLPDHQSFRLRVALSKITQDSDQWIKP 813
Query: 814 XXXXXXXXXXXXMDVMPTAPPSSMFTLYGLKERCAAAETISLVARVLNRSRAHLHSVLSQ 873
MDVMPTAPPSSMFTLYGLKERCAAAETISLVARVLNRSRAHLHSVLSQ
Sbjct: 814 QSISYSPSSPVSMDVMPTAPPSSMFTLYGLKERCAAAETISLVARVLNRSRAHLHSVLSQ 873
Query: 874 SNTSILEEFFGTMVDSVPDLAEHIHRTSARMLLHINGYPDKIANAKWEVKELGMEHNGYV 933
SNTSILEEFFGTMVDSVPDLAEHIHRTSARMLLHINGYPDKIANAKWEVKELGMEHNGYV
Sbjct: 874 SNTSILEEFFGTMVDSVPDLAEHIHRTSARMLLHINGYPDKIANAKWEVKELGMEHNGYV 933
Query: 934 DLLLGEFKHYKTRLDHGGISKELQDLLLEYGIDSIAEVLVEGLSRVKRCTDEGRALMSLD 993
DLLLGEFKHYKTRLDHGGISKELQDLLLEYGIDSIAEVLVEGLSRVKRCTDEGRALMSLD
Sbjct: 934 DLLLGEFKHYKTRLDHGGISKELQDLLLEYGIDSIAEVLVEGLSRVKRCTDEGRALMSLD 993
Query: 994 LQVLINGLLHIVSANVRPKLQIVDTFIKAYYLPETEYVHWARSHPEYSKSQVVGLVNLVA 1053
LQVLINGLLHIVSANVRPKLQIVDTFIKAYYLPETEYVHWARSHPEYSKSQVVGLVNLVA
Sbjct: 994 LQVLINGLLHIVSANVRPKLQIVDTFIKAYYLPETEYVHWARSHPEYSKSQVVGLVNLVA 1053
Query: 1054 TMKGWKRKTRLETIERIEAGP 1074
TMKGWKRKTRLETIERIEAGP
Sbjct: 1054 TMKGWKRKTRLETIERIEAGP 1074
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 31,666,420
Number of extensions: 1253832
Number of successful extensions: 3846
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3844
Number of HSP's successfully gapped: 1
Length of query: 1074
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 963
Effective length of database: 11,240,047
Effective search space: 10824165261
Effective search space used: 10824165261
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 161 (66.6 bits)