BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0527100 Os10g0527100|AK121120
(247 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0527100 Chloroplast ATP synthase a chain precursor (EC... 431 e-121
Os10g0355100 ATPase, F0 complex, subunit A family protein 429 e-121
>Os10g0527100 Chloroplast ATP synthase a chain precursor (EC 3.6.3.14) (ATPase
subunit IV)
Length = 247
Score = 431 bits (1107), Expect = e-121, Method: Compositional matrix adjust.
Identities = 217/247 (87%), Positives = 217/247 (87%)
Query: 1 MNIIPCSIKTLKGLYDISGVEVGQHFYWQIGGFQIHAQVLITSWVVITILLGSVIIAVRN 60
MNIIPCSIKTLKGLYDISGVEVGQHFYWQIGGFQIHAQVLITSWVVITILLGSVIIAVRN
Sbjct: 1 MNIIPCSIKTLKGLYDISGVEVGQHFYWQIGGFQIHAQVLITSWVVITILLGSVIIAVRN 60
Query: 61 PQTIPTDGQNFFEYVLEFIRDLSKTQIGEEYGPWVPFIGTMFLFIFVSNWSGALLPWKII 120
PQTIPTDGQNFFEYVLEFIRDLSKTQIGEEYGPWVPFIGTMFLFIFVSNWSGALLPWKII
Sbjct: 61 PQTIPTDGQNFFEYVLEFIRDLSKTQIGEEYGPWVPFIGTMFLFIFVSNWSGALLPWKII 120
Query: 121 QLPHGELAAPTNDINXXXXXXXXXXXXYFYAGLSKKGLSYFEKYIKPTPILLPINILEDF 180
QLPHGELAAPTNDIN YFYAGLSKKGLSYFEKYIKPTPILLPINILEDF
Sbjct: 121 QLPHGELAAPTNDINTTVALALLTSAAYFYAGLSKKGLSYFEKYIKPTPILLPINILEDF 180
Query: 181 TKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIG 240
TKPLSLSFRLFGNILADE MFLGLFTSGIQALIFATLAAAYIG
Sbjct: 181 TKPLSLSFRLFGNILADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQALIFATLAAAYIG 240
Query: 241 ESMEGHH 247
ESMEGHH
Sbjct: 241 ESMEGHH 247
>Os10g0355100 ATPase, F0 complex, subunit A family protein
Length = 247
Score = 429 bits (1103), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/247 (87%), Positives = 216/247 (87%)
Query: 1 MNIIPCSIKTLKGLYDISGVEVGQHFYWQIGGFQIHAQVLITSWVVITILLGSVIIAVRN 60
MNIIPCSIKTLKGLYDISGVEVGQHFYWQIGGFQIHAQVLITSWVVITILLGSVIIAVRN
Sbjct: 1 MNIIPCSIKTLKGLYDISGVEVGQHFYWQIGGFQIHAQVLITSWVVITILLGSVIIAVRN 60
Query: 61 PQTIPTDGQNFFEYVLEFIRDLSKTQIGEEYGPWVPFIGTMFLFIFVSNWSGALLPWKII 120
PQTIPTDGQNFFEYVLEFIRDLSKTQIGEEYGPWVPFIGTMFLFIFVSNWSGALLPWKII
Sbjct: 61 PQTIPTDGQNFFEYVLEFIRDLSKTQIGEEYGPWVPFIGTMFLFIFVSNWSGALLPWKII 120
Query: 121 QLPHGELAAPTNDINXXXXXXXXXXXXYFYAGLSKKGLSYFEKYIKPTPILLPINILEDF 180
QLPHGE AAPTNDIN YFYAGLSKKGLSYFEKYIKPTPILLPINILEDF
Sbjct: 121 QLPHGEFAAPTNDINTTVALALLTSAAYFYAGLSKKGLSYFEKYIKPTPILLPINILEDF 180
Query: 181 TKPLSLSFRLFGNILADEXXXXXXXXXXXXXXXXXXMFLGLFTSGIQALIFATLAAAYIG 240
TKPLSLSFRLFGNILADE MFLGLFTSGIQALIFATLAAAYIG
Sbjct: 181 TKPLSLSFRLFGNILADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQALIFATLAAAYIG 240
Query: 241 ESMEGHH 247
ESMEGHH
Sbjct: 241 ESMEGHH 247
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.144 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,145,207
Number of extensions: 251152
Number of successful extensions: 474
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 472
Number of HSP's successfully gapped: 2
Length of query: 247
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 149
Effective length of database: 11,918,829
Effective search space: 1775905521
Effective search space used: 1775905521
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)