BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0516400 Os10g0516400|AK103655
(268 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0516400 Conserved hypothetical protein 523 e-149
Os07g0413800 Conserved hypothetical protein 367 e-102
>Os10g0516400 Conserved hypothetical protein
Length = 268
Score = 523 bits (1346), Expect = e-149, Method: Compositional matrix adjust.
Identities = 251/268 (93%), Positives = 251/268 (93%)
Query: 1 MTVSSPSAEEPFRVFVGYDPREDEAYEVCRRSLLRHASIPVDVRPIRQPDLRAAGLYWRE 60
MTVSSPSAEEPFRVFVGYDPREDEAYEVCRRSLLRHASIPVDVRPIRQPDLRAAGLYWRE
Sbjct: 1 MTVSSPSAEEPFRVFVGYDPREDEAYEVCRRSLLRHASIPVDVRPIRQPDLRAAGLYWRE 60
Query: 61 RGPTESTEFSFTRFLTPYLAGYRGWALFVDCDFLYLADIAGLLACLPSSDPDHRLAVACV 120
RGPTESTEFSFTRFLTPYLAGYRGWALFVDCDFLYLADIAGLLACLPSSDPDHRLAVACV
Sbjct: 61 RGPTESTEFSFTRFLTPYLAGYRGWALFVDCDFLYLADIAGLLACLPSSDPDHRLAVACV 120
Query: 121 KHEYAPAEATKMDGAIQTVYPRKNWSSMVLYNCGHPKNVAALTPDAVSTQTGAFLHRFAW 180
KHEYAPAEATKMDGAIQTVYPRKNWSSMVLYNCGHPKNVAALTPDAVSTQTGAFLHRFAW
Sbjct: 121 KHEYAPAEATKMDGAIQTVYPRKNWSSMVLYNCGHPKNVAALTPDAVSTQTGAFLHRFAW 180
Query: 181 LDDDEIGEIPFAWNFLVGHNKVDPADPSTQPKAIHYTSGGPWFERYRNCDFAELWIXXXX 240
LDDDEIGEIPFAWNFLVGHNKVDPADPSTQPKAIHYTSGGPWFERYRNCDFAELWI
Sbjct: 181 LDDDEIGEIPFAWNFLVGHNKVDPADPSTQPKAIHYTSGGPWFERYRNCDFAELWIKEAD 240
Query: 241 XXXXXXXXXXXXXIVMANGEKEKDEEGN 268
IVMANGEKEKDEEGN
Sbjct: 241 ELKADKEKQKQQQIVMANGEKEKDEEGN 268
>Os07g0413800 Conserved hypothetical protein
Length = 285
Score = 367 bits (942), Expect = e-102, Method: Compositional matrix adjust.
Identities = 173/231 (74%), Positives = 198/231 (85%), Gaps = 6/231 (2%)
Query: 7 SAEEPFRVFVGYDPREDEAYEVCRRSLLRHASIPVDVRPIRQPDLRAAGLYWRERGPTES 66
A E FRVFVGYD RED AY VCRRSLL+ +S+PV V PI Q +LR+AGLYWRERGPTES
Sbjct: 22 QAAETFRVFVGYDSREDIAYRVCRRSLLQRSSVPVAVIPIVQQELRSAGLYWRERGPTES 81
Query: 67 TEFSFTRFLTPYLAGYRGWALFVDCDFLYLADIAGLLACLPSSDPDHRLAVACVKHEYAP 126
TEFSFTRFLTP+LAGYRGWALFVDCDFL++AD+A L + D R AV CV H+YAP
Sbjct: 82 TEFSFTRFLTPHLAGYRGWALFVDCDFLFVADVAEL-----ARMADPRYAVLCVHHDYAP 136
Query: 127 AEATKMDGAIQTVYPRKNWSSMVLYNCGHPKNVAALTPDAVSTQTGAFLHRFAWLDDDEI 186
EATKMDGA+QTVYPRKNWSSMVL+NC HPKN AALTP+AVSTQ+GA+LHRF WLDD +I
Sbjct: 137 KEATKMDGAVQTVYPRKNWSSMVLFNCAHPKNRAALTPEAVSTQSGAYLHRFMWLDDADI 196
Query: 187 GEIPFAWNFLVGHNKVDPADPS-TQPKAIHYTSGGPWFERYRNCDFAELWI 236
GE+PF WNFLVGHN+VDPAD + T P+AIHYTSGGPWFE+Y+NC+FAELW+
Sbjct: 197 GEVPFVWNFLVGHNRVDPADTAGTAPRAIHYTSGGPWFEQYKNCEFAELWV 247
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,183,269
Number of extensions: 430661
Number of successful extensions: 669
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 666
Number of HSP's successfully gapped: 2
Length of query: 268
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 169
Effective length of database: 11,866,615
Effective search space: 2005457935
Effective search space used: 2005457935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)