Os07g0413800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0413800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 249.53 | 0.742 | 13.1 | -1.88 | 1.68 | -5.16 | 3.44 | -5.18 | 0.124 | 7.6 | 0.8454 | 1453 | -- | -- |
| 260.2 | 0.751 | 13.2 | -2.38 | 1.64 | -4.1 | 3.78 | -- | 0.0494 | 7.54 | 1.301 | 1458 | -- | -- |
| 275.76 | 0.773 | 13.1 | -1.89 | 1.58 | -5.36 | -- | -5.31 | 0.113 | 7.06 | 0.5065 | 1468 | -- | -- |
| 295.49 | 0.801 | 13.1 | -2.26 | 1.64 | -4.12 | -- | -- | 0.0391 | 7.38 | 1.311 | 1462 | -- | -- |
| 409.46 | 0.942 | 13.1 | -1.84 | -- | -5.48 | -- | -5.17 | 0.182 | -- | 0.5287 | 1482 | -- | -- |
| 437.63 | 0.981 | 13 | -1.43 | 1.8 | -- | 3.38 | -- | 0.566 | 7.75 | -- | -- | -- | -- |
| 470.21 | 1.02 | 13 | -1.34 | 1.8 | -- | -- | -- | 0.563 | 7.86 | -- | -- | -- | -- |
| 430.32 | 0.966 | 13.2 | -2.17 | -- | -4.4 | -- | -- | 0.0731 | -- | 1.66 | 1488 | -- | -- |
| 407.32 | 0.94 | 13.1 | -- | 1.62 | -3.07 | -- | -- | 0.36 | 7.31 | 2.225 | 1480 | -- | -- |
| 645.92 | 1.19 | 13.1 | -1.32 | -- | -- | -- | -- | 0.588 | -- | -- | -- | -- | -- |
| 517.37 | 1.06 | 13 | -- | 1.79 | -- | -- | -- | 0.712 | 7.91 | -- | -- | -- | -- |
| 542.75 | 1.09 | 13.1 | -- | -- | -3.46 | -- | -- | 0.345 | -- | 2.294 | 1498 | -- | -- |
| 691.68 | 1.23 | 13 | -- | -- | -- | -- | -- | 0.734 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 244.60 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 6 | 246.86 | radiation | 1 | 1440 | < th | dose dependent | sin | 16 | NA |
| 17 | 248.29 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 12 |
| 38 | 248.88 | radiation | 1 | 1440 | < th | dose dependent | sin | 21 | NA |
| 44 | 249.09 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 15 |
| 48 | 249.14 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 7 |
| 97 | 250.67 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 15 |
| 98 | 250.70 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 106 | 250.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 19 |
| 114 | 252.04 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 21 |
| 115 | 252.07 | radiation | 1 | 1440 | < th | dose dependent | rect. | 1 | 19 |
| 142 | 252.23 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 158 | 252.33 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 193 | 254.22 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 194 | 254.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 213 | 255.90 | radiation | 20 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 214 | 255.97 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 216 | 256.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 218 | 256.57 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 244 | 258.74 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 248 | 259.23 | radiation | 1 | 1440 | > th | dose independent | sin | 16 | NA |
| 251 | 259.30 | radiation | 1 | 1440 | > th | dose independent | sin | 21 | NA |
| 256 | 259.63 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 258 | 259.83 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 301 | 260.65 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 323 | 260.73 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 324 | 260.92 | radiation | 1 | 1440 | < th | dose independent | sin | 15 | NA |
| 328 | 260.93 | radiation | 1 | 1440 | < th | dose independent | sin | 21 | NA |
| 335 | 261.48 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 348 | 261.98 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 395 | 262.66 | radiation | 1 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 455 | 263.30 | radiation | 1 | 14400 | > th | dose dependent | rect. | 18 | 12 |
| 460 | 263.62 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 504 | 265.26 | radiation | 1 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 516 | 265.43 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 8 |
| 519 | 265.45 | radiation | 10 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 540 | 265.91 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 541 | 265.92 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 555 | 266.48 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 562 | 266.94 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 568 | 267.09 | radiation | 40 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 571 | 267.12 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 572 | 267.15 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 592 | 267.32 | radiation | 10 | 14400 | < th | dose independent | sin | 13 | NA |
| 598 | 267.43 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 7 |
| 617 | 267.66 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 634 | 268.03 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 635 | 268.04 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 648 | 268.49 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 660 | 268.70 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 664 | 268.79 | radiation | 40 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 683 | 269.70 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 715 | 270.28 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 716 | 270.28 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 717 | 270.29 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 15 |
| 720 | 270.31 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 753 | 270.42 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 19 |
| 777 | 270.90 | radiation | 10 | 14400 | < th | dose independent | rect. | 14 | 9 |
| 781 | 270.91 | radiation | 10 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 791 | 270.97 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 820 | 271.16 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 21 |
| 822 | 271.17 | radiation | 40 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 824 | 271.18 | radiation | 40 | 14400 | < th | dose independent | rect. | 1 | 8 |
| 825 | 271.19 | radiation | 1 | 1440 | < th | dose independent | rect. | 1 | 19 |
| 858 | 271.30 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 859 | 271.31 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 860 | 271.31 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 913 | 271.33 | humidity | 90 | 43200 | < th | dose independent | rect. | 3 | 21 |
| 935 | 271.38 | radiation | 40 | 14400 | < th | dose independent | rect. | 22 | 11 |
| 968 | 271.50 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 1 |