BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0413800 Os07g0413800|AK061478
(285 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0413800 Conserved hypothetical protein 520 e-148
Os10g0516400 Conserved hypothetical protein 370 e-103
>Os07g0413800 Conserved hypothetical protein
Length = 285
Score = 520 bits (1338), Expect = e-148, Method: Compositional matrix adjust.
Identities = 248/248 (100%), Positives = 248/248 (100%)
Query: 1 MSVTPTNDVVMTGPVAGAGDVQAAETFRVFVGYDSREDIAYRVCRRSLLQRSSVPVAVIP 60
MSVTPTNDVVMTGPVAGAGDVQAAETFRVFVGYDSREDIAYRVCRRSLLQRSSVPVAVIP
Sbjct: 1 MSVTPTNDVVMTGPVAGAGDVQAAETFRVFVGYDSREDIAYRVCRRSLLQRSSVPVAVIP 60
Query: 61 IVQQELRSAGLYWRERGPTESTEFSFTRFLTPHLAGYRGWALFVDCDFLFVADVAELARM 120
IVQQELRSAGLYWRERGPTESTEFSFTRFLTPHLAGYRGWALFVDCDFLFVADVAELARM
Sbjct: 61 IVQQELRSAGLYWRERGPTESTEFSFTRFLTPHLAGYRGWALFVDCDFLFVADVAELARM 120
Query: 121 ADPRYAVLCVHHDYAPKEATKMDGAVQTVYPRKNWSSMVLFNCAHPKNRAALTPEAVSTQ 180
ADPRYAVLCVHHDYAPKEATKMDGAVQTVYPRKNWSSMVLFNCAHPKNRAALTPEAVSTQ
Sbjct: 121 ADPRYAVLCVHHDYAPKEATKMDGAVQTVYPRKNWSSMVLFNCAHPKNRAALTPEAVSTQ 180
Query: 181 SGAYLHRFMWLDDADIGEVPFVWNFLVGHNRVDPADTAGTAPRAIHYTSGGPWFEQYKNC 240
SGAYLHRFMWLDDADIGEVPFVWNFLVGHNRVDPADTAGTAPRAIHYTSGGPWFEQYKNC
Sbjct: 181 SGAYLHRFMWLDDADIGEVPFVWNFLVGHNRVDPADTAGTAPRAIHYTSGGPWFEQYKNC 240
Query: 241 EFAELWVQ 248
EFAELWVQ
Sbjct: 241 EFAELWVQ 248
>Os10g0516400 Conserved hypothetical protein
Length = 268
Score = 370 bits (949), Expect = e-103, Method: Compositional matrix adjust.
Identities = 173/231 (74%), Positives = 199/231 (86%), Gaps = 6/231 (2%)
Query: 23 AAETFRVFVGYDSREDIAYRVCRRSLLQRSSVPVAVIPIVQQELRSAGLYWRERGPTEST 82
A E FRVFVGYD RED AY VCRRSLL+ +S+PV V PI Q +LR+AGLYWRERGPTEST
Sbjct: 8 AEEPFRVFVGYDPREDEAYEVCRRSLLRHASIPVDVRPIRQPDLRAAGLYWRERGPTEST 67
Query: 83 EFSFTRFLTPHLAGYRGWALFVDCDFLFVADVAEL-----ARMADPRYAVLCVHHDYAPK 137
EFSFTRFLTP+LAGYRGWALFVDCDFL++AD+A L + D R AV CV H+YAP
Sbjct: 68 EFSFTRFLTPYLAGYRGWALFVDCDFLYLADIAGLLACLPSSDPDHRLAVACVKHEYAPA 127
Query: 138 EATKMDGAVQTVYPRKNWSSMVLFNCAHPKNRAALTPEAVSTQSGAYLHRFMWLDDADIG 197
EATKMDGA+QTVYPRKNWSSMVL+NC HPKN AALTP+AVSTQ+GA+LHRF WLDD +IG
Sbjct: 128 EATKMDGAIQTVYPRKNWSSMVLYNCGHPKNVAALTPDAVSTQTGAFLHRFAWLDDDEIG 187
Query: 198 EVPFVWNFLVGHNRVDPADTAGTAPRAIHYTSGGPWFEQYKNCEFAELWVQ 248
E+PF WNFLVGHN+VDPAD + T P+AIHYTSGGPWFE+Y+NC+FAELW++
Sbjct: 188 EIPFAWNFLVGHNKVDPADPS-TQPKAIHYTSGGPWFERYRNCDFAELWIK 237
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,186,888
Number of extensions: 370099
Number of successful extensions: 912
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 910
Number of HSP's successfully gapped: 2
Length of query: 285
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 185
Effective length of database: 11,814,401
Effective search space: 2185664185
Effective search space used: 2185664185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 155 (64.3 bits)