BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0516300 Os10g0516300|AK065934
         (376 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0516300  Similar to Electron transfer flavoprotein-ubiq...   787   0.0  

>Os10g0516300 Similar to Electron transfer flavoprotein-ubiquinone
           oxidoreductase, mitochondrial precursor (EC 1.5.5.1)
           (ETF-QO) (ETF-ubiquinone oxidoreductase) (ETF
           dehydrogenase) (Electron-transferring- flavoprotein
           dehydrogenase) (Fragment)
          Length = 376

 Score =  787 bits (2032), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/376 (100%), Positives = 376/376 (100%)

Query: 1   TKSYLENAGRMTLLAEGCRGSLSEKIIRNHKLRESGQGQHQTYALGIKEVWEIEEGKHKP 60
           TKSYLENAGRMTLLAEGCRGSLSEKIIRNHKLRESGQGQHQTYALGIKEVWEIEEGKHKP
Sbjct: 1   TKSYLENAGRMTLLAEGCRGSLSEKIIRNHKLRESGQGQHQTYALGIKEVWEIEEGKHKP 60

Query: 61  GSVIHTVGWPLDSKTYGGSFMYHLDDRQLAIGLVVALNYQNPFMSPYDEFQKFKQHPAVR 120
           GSVIHTVGWPLDSKTYGGSFMYHLDDRQLAIGLVVALNYQNPFMSPYDEFQKFKQHPAVR
Sbjct: 61  GSVIHTVGWPLDSKTYGGSFMYHLDDRQLAIGLVVALNYQNPFMSPYDEFQKFKQHPAVR 120

Query: 121 TILDGGTVLQYGARTLNEGGFQSIPNPVFPGGAIIGCSAGFLNVPKIKGTHTAMKSGMLA 180
           TILDGGTVLQYGARTLNEGGFQSIPNPVFPGGAIIGCSAGFLNVPKIKGTHTAMKSGMLA
Sbjct: 121 TILDGGTVLQYGARTLNEGGFQSIPNPVFPGGAIIGCSAGFLNVPKIKGTHTAMKSGMLA 180

Query: 181 AEATFKTLVEGSSMELYWENLKKSWIWEELYRARNYRPAFEYGFIPGIALSALERYVFKG 240
           AEATFKTLVEGSSMELYWENLKKSWIWEELYRARNYRPAFEYGFIPGIALSALERYVFKG
Sbjct: 181 AEATFKTLVEGSSMELYWENLKKSWIWEELYRARNYRPAFEYGFIPGIALSALERYVFKG 240

Query: 241 KSPFTLKHGIPDHEATDMASLHSPIQYPKPDGQISFDVPTSLYRSSTNHEHDQPPHLRLR 300
           KSPFTLKHGIPDHEATDMASLHSPIQYPKPDGQISFDVPTSLYRSSTNHEHDQPPHLRLR
Sbjct: 241 KSPFTLKHGIPDHEATDMASLHSPIQYPKPDGQISFDVPTSLYRSSTNHEHDQPPHLRLR 300

Query: 301 DPTVPERVNLPLYAGPESHYCPARVYEYVTDEKGDQKLHINAQNCLHCKACDIKDPKQNI 360
           DPTVPERVNLPLYAGPESHYCPARVYEYVTDEKGDQKLHINAQNCLHCKACDIKDPKQNI
Sbjct: 301 DPTVPERVNLPLYAGPESHYCPARVYEYVTDEKGDQKLHINAQNCLHCKACDIKDPKQNI 360

Query: 361 EWTVPEGGGGPGYTVM 376
           EWTVPEGGGGPGYTVM
Sbjct: 361 EWTVPEGGGGPGYTVM 376



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,209,288
Number of extensions: 713830
Number of successful extensions: 1239
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1239
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 274
Effective length of database: 11,709,973
Effective search space: 3208532602
Effective search space used: 3208532602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)