BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0515000 Os10g0515000|AK121092
(119 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0515000 Conserved hypothetical protein 240 1e-64
Os07g0561900 Conserved hypothetical protein 162 4e-41
Os08g0487600 148 1e-36
Os01g0341900 139 4e-34
Os02g0493400 111 1e-25
Os03g0454000 109 4e-25
Os07g0243500 96 4e-21
>Os10g0515000 Conserved hypothetical protein
Length = 119
Score = 240 bits (613), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MVRLYRLFDVIFLNDRRDRVPVIISRASSRTSVHNALPCVHDHSTASYVRSAARLPRHHR 60
MVRLYRLFDVIFLNDRRDRVPVIISRASSRTSVHNALPCVHDHSTASYVRSAARLPRHHR
Sbjct: 1 MVRLYRLFDVIFLNDRRDRVPVIISRASSRTSVHNALPCVHDHSTASYVRSAARLPRHHR 60
Query: 61 LPDFGYIDHGYSTHGFSDHGSPGSFALATSTMAQRAIIRVEHSCRFILQSKCPRCSRLD 119
LPDFGYIDHGYSTHGFSDHGSPGSFALATSTMAQRAIIRVEHSCRFILQSKCPRCSRLD
Sbjct: 61 LPDFGYIDHGYSTHGFSDHGSPGSFALATSTMAQRAIIRVEHSCRFILQSKCPRCSRLD 119
>Os07g0561900 Conserved hypothetical protein
Length = 154
Score = 162 bits (411), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/118 (74%), Positives = 93/118 (78%), Gaps = 8/118 (6%)
Query: 2 VRLYRLFDVIFLNDRRDRVPVIISRASSRTSVHNALPCVHDHSTASYVRSAARLPRHHRL 61
VRL+RLF + FLND RDRV VIIS SSRT VH DHST + R ARLPRH +L
Sbjct: 37 VRLHRLFGINFLNDCRDRVTVIISCTSSRTLVH-------DHSTTPHARPVARLPRH-QL 88
Query: 62 PDFGYIDHGYSTHGFSDHGSPGSFALATSTMAQRAIIRVEHSCRFILQSKCPRCSRLD 119
PD GYIDHGYSTHGF DHGS GSF LATSTMAQRAIIRVEHSCRF+LQSKCPRCSRL
Sbjct: 89 PDIGYIDHGYSTHGFIDHGSFGSFILATSTMAQRAIIRVEHSCRFLLQSKCPRCSRLK 146
>Os08g0487600
Length = 161
Score = 148 bits (373), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/105 (73%), Positives = 86/105 (81%), Gaps = 6/105 (5%)
Query: 20 VPVIISRASSRTS-----VHNALPCVHDHSTASYVRSAARLPRHHRLPDFGYIDHGYSTH 74
+ VI+S +SS VH+AL C+HDHSTA + AARLP+H +LPDFGYIDHGY TH
Sbjct: 43 IAVIVSPSSSLACLRAPLVHDALLCIHDHSTAPHALPAARLPQH-QLPDFGYIDHGYYTH 101
Query: 75 GFSDHGSPGSFALATSTMAQRAIIRVEHSCRFILQSKCPRCSRLD 119
GF DHGS GSFALATSTMAQRAIIRVEHSCRF+LQSKCPRCSRLD
Sbjct: 102 GFIDHGSLGSFALATSTMAQRAIIRVEHSCRFLLQSKCPRCSRLD 146
>Os01g0341900
Length = 450
Score = 139 bits (351), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 70/87 (80%), Positives = 76/87 (87%), Gaps = 1/87 (1%)
Query: 33 VHNALPCVHDHSTASYVRSAARLPRHHRLPDFGYIDHGYSTHGFSDHGSPGSFALATSTM 92
VH+AL CVH+HSTA +V ARL RH +LPDFGYIDHGYSTHGF DHGS GSFALATSTM
Sbjct: 361 VHDALLCVHNHSTAPHVLPVARLSRH-QLPDFGYIDHGYSTHGFIDHGSLGSFALATSTM 419
Query: 93 AQRAIIRVEHSCRFILQSKCPRCSRLD 119
AQ AIIR+EHSCRF+LQSKC RCSRLD
Sbjct: 420 AQSAIIRIEHSCRFLLQSKCLRCSRLD 446
>Os02g0493400
Length = 341
Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 64/87 (73%), Gaps = 1/87 (1%)
Query: 33 VHNALPCVHDHSTASYVRSAARLPRHHRLPDFGYIDHGYSTHGFSDHGSPGSFALATSTM 92
VH+A P + AARLPRH L FGYI+HGYSTHGF DHGS AL+TSTM
Sbjct: 190 VHDAPPVRPRPLYGAPCAPAARLPRHQLL-YFGYINHGYSTHGFIDHGSLAPIALSTSTM 248
Query: 93 AQRAIIRVEHSCRFILQSKCPRCSRLD 119
AQRAIIRVEHSCRF+LQSKC RCSRLD
Sbjct: 249 AQRAIIRVEHSCRFLLQSKCLRCSRLD 275
>Os03g0454000
Length = 122
Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/76 (76%), Positives = 62/76 (81%), Gaps = 1/76 (1%)
Query: 24 ISRASSRTS-VHNALPCVHDHSTASYVRSAARLPRHHRLPDFGYIDHGYSTHGFSDHGSP 82
+S A RT VH+ALP VHDHSTA +VR AA+LPRHHRLP GYIDHGYSTHGF DHGS
Sbjct: 28 LSPARPRTPLVHDALPSVHDHSTAPHVRLAAQLPRHHRLPYLGYIDHGYSTHGFIDHGSL 87
Query: 83 GSFALATSTMAQRAII 98
GSF LATST AQRAII
Sbjct: 88 GSFVLATSTTAQRAII 103
>Os07g0243500
Length = 468
Score = 96.3 bits (238), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/63 (76%), Positives = 53/63 (84%), Gaps = 1/63 (1%)
Query: 43 HSTASYVRSAARLPRHHRLPDFGYIDHGYSTHGFSDHGSPGSFALATSTMAQRAIIRVEH 102
HSTA + RS ARL RH +LPDFGYIDHGYSTHG+ DHGS +ALATST AQRAIIR+EH
Sbjct: 269 HSTAPHARSVARLLRH-QLPDFGYIDHGYSTHGYLDHGSLTPYALATSTTAQRAIIRIEH 327
Query: 103 SCR 105
SCR
Sbjct: 328 SCR 330
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.138 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,021,541
Number of extensions: 144333
Number of successful extensions: 571
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 553
Number of HSP's successfully gapped: 7
Length of query: 119
Length of database: 17,035,801
Length adjustment: 85
Effective length of query: 34
Effective length of database: 12,597,611
Effective search space: 428318774
Effective search space used: 428318774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)