BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0509600 Os10g0509600|Os10g0509600
         (89 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0509600  Conserved hypothetical protein                       91   2e-19
Os10g0509401  Conserved hypothetical protein                       80   2e-16

>Os10g0509600 Conserved hypothetical protein
          Length = 89

 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/89 (59%), Positives = 53/89 (59%)

Query: 1  MDAKEAEEVMRRNAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVQLGELEA 60
          MDAKEAEEVMRRNAK                                    CVQLGELEA
Sbjct: 1  MDAKEAEEVMRRNAKLEAAAAEAAAREARLRRELEAALARLAVAEEGEERLCVQLGELEA 60

Query: 61 EAMAQAVEYQQRVRELSDRLAFVDGILRP 89
          EAMAQAVEYQQRVRELSDRLAFVDGILRP
Sbjct: 61 EAMAQAVEYQQRVRELSDRLAFVDGILRP 89



>Os10g0509401 Conserved hypothetical protein
          Length = 103

 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/89 (53%), Positives = 50/89 (56%)

Query: 1  MDAKEAEEVMRRNAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVQLGELEA 60
          MDAKEAEEVMRRNA                                     CVQLGELEA
Sbjct: 1  MDAKEAEEVMRRNAALEAAAAEAAAREERLRRELEAALAALAVAEEAEERLCVQLGELEA 60

Query: 61 EAMAQAVEYQQRVRELSDRLAFVDGILRP 89
          EAMAQAVEYQQ+VRELSDRLAF DG+LR 
Sbjct: 61 EAMAQAVEYQQQVRELSDRLAFADGVLRS 89



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.130    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,191,054
Number of extensions: 16281
Number of successful extensions: 74
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 2
Length of query: 89
Length of database: 17,035,801
Length adjustment: 59
Effective length of query: 30
Effective length of database: 13,955,175
Effective search space: 418655250
Effective search space used: 418655250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)