BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0502000 Os10g0502000|AK099827
         (236 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0502000  Similar to Thylakoid lumenal 17.4 kDa protein ...   327   6e-90

>Os10g0502000 Similar to Thylakoid lumenal 17.4 kDa protein (P17.4) (Fragment)
          Length = 236

 Score =  327 bits (837), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 157/157 (100%), Positives = 157/157 (100%)

Query: 80  QRLPPLSTEPNRCERAFVGNTIGQANGVYDKPLDLRFCDYTNEKTNLKGKSLAAALMSDS 139
           QRLPPLSTEPNRCERAFVGNTIGQANGVYDKPLDLRFCDYTNEKTNLKGKSLAAALMSDS
Sbjct: 80  QRLPPLSTEPNRCERAFVGNTIGQANGVYDKPLDLRFCDYTNEKTNLKGKSLAAALMSDS 139

Query: 140 KFDGADMSEVVMSKAYAVGASFKGTDFTNAVIDRVNFEKADLQGAIFRNTVLSGSTFDDA 199
           KFDGADMSEVVMSKAYAVGASFKGTDFTNAVIDRVNFEKADLQGAIFRNTVLSGSTFDDA
Sbjct: 140 KFDGADMSEVVMSKAYAVGASFKGTDFTNAVIDRVNFEKADLQGAIFRNTVLSGSTFDDA 199

Query: 200 KMQDVVFEDTIIGYIDLQKLCTNTSISADSRLELGCR 236
           KMQDVVFEDTIIGYIDLQKLCTNTSISADSRLELGCR
Sbjct: 200 KMQDVVFEDTIIGYIDLQKLCTNTSISADSRLELGCR 236



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,830,796
Number of extensions: 173184
Number of successful extensions: 373
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 367
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 138
Effective length of database: 11,918,829
Effective search space: 1644798402
Effective search space used: 1644798402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)