Os10g0502000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Thylakoid lumenal 17.4 kDa protein (P17.4) (Fragment).
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Os10g0502000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Thylakoid lumenal 17.4 kDa protein (P17.4) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 142.48 | 0.561 | 12.9 | -1.87 | 2.06 | 1.04 | 2.16 | 2.65 | -0.977 | 22.5 | 22.68 | 166 | -- | -- |
| 151.08 | 0.572 | 12.9 | -1.84 | 2.01 | 0.88 | 1.47 | -- | -0.981 | 22.4 | 22.18 | 169 | -- | -- |
| 159.15 | 0.588 | 12.9 | -1.9 | 2.07 | 0.922 | -- | 2.02 | -0.982 | 22.3 | 26.3 | 168 | -- | -- |
| 158.91 | 0.587 | 12.9 | -1.9 | 2.03 | 0.908 | -- | -- | -0.974 | 22.5 | 23.23 | 168 | -- | -- |
| 277.32 | 0.776 | 12.9 | -2.29 | -- | 1.54 | -- | 3.68 | -1.01 | -- | 0.003675 | 994 | -- | -- |
| 161.65 | 0.596 | 12.9 | -1.87 | 1.83 | -- | 1.54 | -- | -0.93 | 21.9 | -- | -- | -- | -- |
| 170.89 | 0.612 | 12.9 | -1.93 | 1.82 | -- | -- | -- | -0.934 | 22 | -- | -- | -- | -- |
| 263.9 | 0.757 | 12.9 | -2.09 | -- | 1.76 | -- | -- | -1.18 | -- | -4.72 | 993 | -- | -- |
| 252.15 | 0.74 | 12.8 | -- | 1.99 | 1.16 | -- | -- | -0.74 | 22.3 | 48.64 | 190 | -- | -- |
| 370.04 | 0.899 | 12.8 | -1.91 | -- | -- | -- | -- | -0.933 | -- | -- | -- | -- | -- |
| 269.41 | 0.768 | 12.8 | -- | 1.81 | -- | -- | -- | -0.718 | 21.9 | -- | -- | -- | -- |
| 377.93 | 0.905 | 12.8 | -- | -- | 1.6 | -- | -- | -0.922 | -- | -4.588 | 985 | -- | -- |
| 466.45 | 1.01 | 12.8 | -- | -- | -- | -- | -- | -0.721 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 135.28 | wind | 1.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 2 | 135.78 | wind | 1.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 3 | 136.88 | wind | 1.0 | 43200 | > th | dose independent | rect. | 14 | 11 |
| 4 | 136.95 | wind | 1.0 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 5 | 137.10 | wind | 1.0 | 43200 | > th | dose independent | rect. | 16 | 9 |
| 9 | 137.19 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 18 |
| 10 | 137.20 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 24 | 14 |
| 14 | 137.34 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 13 |
| 15 | 137.36 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 6 | 18 |
| 19 | 137.69 | temperature | 20.0 | 270 | > th | dose dependent | sin | 5 | NA |
| 30 | 138.17 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 31 | 138.19 | radiation | 30.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 33 | 138.29 | radiation | 30.0 | 10 | < th | dose independent | rect. | 6 | 18 |
| 40 | 138.57 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 52 | 138.91 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 3 |
| 59 | 139.08 | temperature | 30.0 | 270 | < th | dose dependent | sin | 4 | NA |
| 65 | 139.19 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 6 | 16 |
| 78 | 139.43 | radiation | 30.0 | 10 | < th | dose independent | rect. | 6 | 6 |
| 79 | 139.44 | wind | 1.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 83 | 139.53 | radiation | 30.0 | 10 | < th | dose independent | rect. | 6 | 20 |
| 84 | 139.53 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 18 | 7 |
| 85 | 139.56 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 6 | 20 |
| 102 | 139.93 | radiation | 30.0 | 10 | < th | dose independent | rect. | 6 | 8 |
| 104 | 139.95 | wind | 1.0 | 43200 | < th | dose dependent | sin | 18 | NA |
| 124 | 140.21 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 146 | 140.47 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 11 | 4 |
| 147 | 140.48 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 153 | 140.52 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 155 | 140.53 | wind | 1.0 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 162 | 140.59 | wind | 1.0 | 14400 | < th | dose independent | rect. | 22 | 3 |
| 169 | 140.67 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 170 | 140.68 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 176 | 140.71 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 5 | 13 |
| 189 | 140.83 | wind | 1.0 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 192 | 140.89 | wind | 1.0 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 194 | 140.90 | wind | 1.0 | 43200 | > th | dose independent | sin | 16 | NA |
| 201 | 140.94 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 205 | 140.97 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 11 | 5 |
| 223 | 141.07 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 3 | 20 |
| 230 | 141.10 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 234 | 141.12 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 6 | 14 |
| 235 | 141.12 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 13 | 2 |
| 237 | 141.14 | wind | 1.0 | 43200 | < th | dose independent | sin | 17 | NA |
| 244 | 141.18 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 11 | 5 |
| 254 | 141.26 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 14 | 5 |
| 259 | 141.28 | wind | 5.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 266 | 141.34 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 268 | 141.34 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 14 | 5 |
| 285 | 141.43 | wind | 1.0 | 43200 | > th | dose independent | rect. | 21 | 4 |
| 298 | 141.49 | wind | 5.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 318 | 141.59 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 326 | 141.62 | wind | 9.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 331 | 141.64 | wind | 5.0 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 337 | 141.66 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 338 | 141.67 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 343 | 141.68 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 372 | 141.76 | wind | 1.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 385 | 141.83 | wind | 5.0 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 404 | 141.92 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 408 | 141.94 | wind | 5.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 425 | 141.99 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 10 |
| 437 | 142.02 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 440 | 142.03 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 448 | 142.06 | wind | 9.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 452 | 142.09 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 476 | 142.18 | temperature | 25.0 | 270 | < th | dose independent | sin | 4 | NA |
| 506 | 142.29 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 526 | 142.36 | temperature | 25.0 | 270 | > th | dose independent | rect. | 2 | 12 |
| 528 | 142.36 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 11 | 8 |
| 553 | 142.46 | radiation | 20.0 | 270 | > th | dose dependent | rect. | 8 | 5 |
| 560 | 142.49 | wind | 5.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 612 | 142.56 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 623 | 142.59 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 3 |
| 632 | 142.61 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 636 | 142.62 | temperature | 25.0 | 270 | > th | dose independent | sin | 5 | NA |
| 657 | 142.71 | radiation | 30.0 | 270 | < th | dose independent | rect. | 3 | 20 |
| 664 | 142.73 | radiation | 20.0 | 270 | > th | dose dependent | sin | 6 | NA |
| 670 | 142.75 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 20 | 9 |
| 680 | 142.76 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 683 | 142.76 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 690 | 142.78 | radiation | 30.0 | 90 | < th | dose independent | rect. | 5 | 20 |
| 696 | 142.79 | radiation | 1.0 | 90 | < th | dose dependent | sin | 9 | NA |
| 700 | 142.80 | radiation | 1.0 | 90 | < th | dose independent | sin | 9 | NA |
| 701 | 142.80 | temperature | 25.0 | 10 | > th | dose independent | rect. | 5 | 6 |
| 703 | 142.81 | radiation | 40.0 | 14400 | > th | dose independent | rect. | 12 | 2 |
| 711 | 142.83 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 10 | 6 |
| 721 | 142.86 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 722 | 142.86 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 727 | 142.88 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 20 | 13 |
| 740 | 142.90 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 7 | 23 |
| 752 | 142.91 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 765 | 142.94 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 786 | 142.96 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 6 | 6 |
| 804 | 142.98 | radiation | 30.0 | 10 | < th | dose independent | rect. | 6 | 16 |
| 805 | 142.98 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 862 | 143.06 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 866 | 143.07 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 897 | 143.12 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 9 | 8 |
| 959 | 143.21 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 996 | 143.25 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 3 |