BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0500600 Os10g0500600|AK103175
         (480 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0500600  Conserved hypothetical protein                      956   0.0  

>Os10g0500600 Conserved hypothetical protein
          Length = 480

 Score =  956 bits (2470), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/480 (96%), Positives = 463/480 (96%)

Query: 1   MVGKELVVRKNGPVDIREIAAKATLREVRQNGHTYVELRRVGKRVIFFCTICLTECFSDT 60
           MVGKELVVRKNGPVDIREIAAKATLREVRQNGHTYVELRRVGKRVIFFCTICLTECFSDT
Sbjct: 1   MVGKELVVRKNGPVDIREIAAKATLREVRQNGHTYVELRRVGKRVIFFCTICLTECFSDT 60

Query: 61  VLFDHLKGNLHSRRYAEAKVTLFGPMPWPFNDGVLFFNNSREKDPLLLDSSSQNTRELAL 120
           VLFDHLKGNLHSRRYAEAKVTLFGPMPWPFNDGVLFFNNSREKDPLLLDSSSQNTRELAL
Sbjct: 61  VLFDHLKGNLHSRRYAEAKVTLFGPMPWPFNDGVLFFNNSREKDPLLLDSSSQNTRELAL 120

Query: 121 VPANDTEVTSRLRDDSSSRNGAKGTRRGANAHGNGRTASVSEDHVLSNQSGTDGPLVIPS 180
           VPANDTEVTSRLRDDSSSRNGAKGTRRGANAHGNGRTASVSEDHVLSNQSGTDGPLVIPS
Sbjct: 121 VPANDTEVTSRLRDDSSSRNGAKGTRRGANAHGNGRTASVSEDHVLSNQSGTDGPLVIPS 180

Query: 181 VLLKDVVSDLPVHLLGYGNIAYRLWEASKGSKKISKIWCAWVGQDGSHGLDECDTYEQSD 240
           VLLKDVVSDLPVHLLGYGNIAYRLWEASKGSKKISKIWCAWVGQDGSHGLDECDTYEQSD
Sbjct: 181 VLLKDVVSDLPVHLLGYGNIAYRLWEASKGSKKISKIWCAWVGQDGSHGLDECDTYEQSD 240

Query: 241 FAIVNFSYTIELGRKWSSDDQDLPISAGSFFVIDDAGHRGKRRKKSFXXXXXXXXXXXXX 300
           FAIVNFSYTIELGRKWSSDDQDLPISAGSFFVIDDAGHRGKRRKKSF             
Sbjct: 241 FAIVNFSYTIELGRKWSSDDQDLPISAGSFFVIDDAGHRGKRRKKSFSDQEASSEESNEQ 300

Query: 301 XXXXHDNSQAIITGSPTGTSHNLQVGLLSTKSMRRELRKQKRLAAEKACDICGRPMLLEK 360
               HDNSQAIITGSPTGTSHNLQVGLLSTKSMRRELRKQKRLAAEKACDICGRPMLLEK
Sbjct: 301 SSSAHDNSQAIITGSPTGTSHNLQVGLLSTKSMRRELRKQKRLAAEKACDICGRPMLLEK 360

Query: 361 DVATLLNCKTGNLACSSRNSSGAFHLFHTSCLVHWTILCQYEMLADKIASKGKSNRGRKA 420
           DVATLLNCKTGNLACSSRNSSGAFHLFHTSCLVHWTILCQYEMLADKIASKGKSNRGRKA
Sbjct: 361 DVATLLNCKTGNLACSSRNSSGAFHLFHTSCLVHWTILCQYEMLADKIASKGKSNRGRKA 420

Query: 421 KNAPKKITSILCPECQGTGIHVEGDELEKPTISLSEVQTSECYSSLLLFFNWTCFNYLLC 480
           KNAPKKITSILCPECQGTGIHVEGDELEKPTISLSEVQTSECYSSLLLFFNWTCFNYLLC
Sbjct: 421 KNAPKKITSILCPECQGTGIHVEGDELEKPTISLSEVQTSECYSSLLLFFNWTCFNYLLC 480



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,417,561
Number of extensions: 697189
Number of successful extensions: 2100
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2099
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 375
Effective length of database: 11,553,331
Effective search space: 4332499125
Effective search space used: 4332499125
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)