Os10g0500600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os10g0500600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.19 | 0.283 | 13 | -0.751 | 0.787 | -0.246 | -2.66 | 4.35 | -0.381 | 6.63 | 9.176 | 660 | -- | -- |
| 49.89 | 0.329 | 13 | -0.771 | 0.757 | -0.324 | -0.204 | -- | -0.39 | 7.1 | 10 | 2237 | -- | -- |
| 43.12 | 0.306 | 13 | -0.809 | 0.677 | -0.279 | -- | 4.83 | -0.369 | 6.49 | 54.28 | 329 | -- | -- |
| 45.56 | 0.314 | 12.9 | -0.692 | 0.591 | -0.802 | -- | -- | -0.348 | 7.35 | 59.99 | 1474 | -- | -- |
| 59.36 | 0.359 | 13 | -0.914 | -- | 0.178 | -- | 4.71 | -0.359 | -- | 54.05 | 410 | -- | -- |
| 51.52 | 0.336 | 13 | -0.807 | 0.623 | -- | -0.303 | -- | -0.369 | 7.18 | -- | -- | -- | -- |
| 51.68 | 0.337 | 13 | -0.815 | 0.625 | -- | -- | -- | -0.369 | 6.96 | -- | -- | -- | -- |
| 64.71 | 0.375 | 13 | -0.799 | -- | 0.458 | -- | -- | -0.324 | -- | 50.29 | 743 | -- | -- |
| 40.3 | 0.296 | 12.9 | -- | 0.646 | -0.913 | -- | -- | -0.198 | 6.68 | 58.7 | 23576 | -- | -- |
| 72.22 | 0.397 | 13 | -0.802 | -- | -- | -- | -- | -0.357 | -- | -- | -- | -- | -- |
| 69.18 | 0.389 | 13 | -- | 0.616 | -- | -- | -- | -0.278 | 7.04 | -- | -- | -- | -- |
| 60.52 | 0.362 | 12.9 | -- | -- | -0.995 | -- | -- | -0.152 | -- | 59.89 | 26227 | -- | -- |
| 89.19 | 0.441 | 13 | -- | -- | -- | -- | -- | -0.268 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.77 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 3 |
| 2 | 33.83 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 5 | 34.06 | radiation | 10 | 720 | < th | dose independent | rect. | 15 | 17 |
| 8 | 34.28 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 9 |
| 9 | 34.32 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 20 | 34.44 | radiation | 10 | 720 | < th | dose independent | sin | 12 | NA |
| 26 | 34.53 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 12 |
| 56 | 34.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 92 | 35.08 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 110 | 35.24 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 7 |
| 130 | 35.40 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 4 |
| 162 | 35.55 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 277 | 36.06 | radiation | 10 | 720 | < th | dose independent | rect. | 5 | 22 |
| 280 | 36.07 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 2 |
| 284 | 36.09 | radiation | 10 | 720 | < th | dose independent | rect. | 3 | 22 |
| 287 | 36.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 288 | 36.10 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 16 |
| 289 | 36.10 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 18 |
| 313 | 36.21 | radiation | 10 | 720 | < th | dose independent | rect. | 5 | 17 |
| 319 | 36.22 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 336 | 36.27 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 338 | 36.27 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 368 | 36.36 | radiation | 10 | 720 | < th | dose independent | rect. | 1 | 23 |
| 371 | 36.37 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 372 | 36.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 401 | 36.46 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 7 |
| 410 | 36.48 | radiation | 40 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 422 | 36.51 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 3 |
| 431 | 36.53 | radiation | 10 | 720 | < th | dose independent | rect. | 9 | 23 |
| 443 | 36.56 | radiation | 40 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 446 | 36.57 | radiation | 40 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 463 | 36.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 467 | 36.62 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 486 | 36.64 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 497 | 36.66 | temperature | 25 | 270 | < th | dose independent | sin | 2 | NA |
| 500 | 36.66 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 503 | 36.66 | radiation | 40 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 508 | 36.68 | temperature | 25 | 270 | > th | dose independent | sin | 0 | NA |
| 517 | 36.69 | radiation | 10 | 720 | < th | dose independent | no | NA | NA |
| 522 | 36.70 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 527 | 36.71 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 5 |
| 531 | 36.71 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 14 |
| 543 | 36.73 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 556 | 36.77 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 566 | 36.80 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 6 |
| 567 | 36.81 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 573 | 36.82 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 15 |
| 575 | 36.83 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 3 |
| 596 | 36.86 | temperature | 20 | 720 | > th | dose independent | sin | 3 | NA |
| 597 | 36.86 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 1 |
| 636 | 36.95 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 652 | 36.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 664 | 37.00 | radiation | 10 | 1440 | < th | dose independent | rect. | 18 | 8 |
| 678 | 37.01 | radiation | 30 | 14400 | > th | dose dependent | rect. | 16 | 16 |
| 731 | 37.10 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 810 | 37.22 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 834 | 37.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 869 | 37.32 | radiation | 10 | 720 | < th | dose dependent | rect. | 17 | 22 |
| 920 | 37.40 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 934 | 37.42 | radiation | 10 | 720 | < th | dose independent | rect. | 20 | 23 |
| 951 | 37.45 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 4 |