BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0497000 Os10g0497000|AK120408
         (887 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0497000  Armadillo-like helical domain containing protein   1437   0.0  

>Os10g0497000 Armadillo-like helical domain containing protein
          Length = 887

 Score = 1437 bits (3720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 740/887 (83%), Positives = 740/887 (83%)

Query: 1   MIVRTYXXXXXXXXXXXXXXXXXXXXXXXXQDAFEFXXXXXXXXXXXXXXXXXXXXXXXX 60
           MIVRTY                        QDAFEF                        
Sbjct: 1   MIVRTYGRRSRSFSDGGGGERGGGGGFSSSQDAFEFDGEEEDDLVLLGSSSQSSHPPAPS 60

Query: 61  XXXXXMWDFDEDXXXXXXXXXXXXXXXDYAEPXXXXXXXXXXXSLMEAEEYGEMMESVDE 120
                MWDFDED               DYAEP           SLMEAEEYGEMMESVDE
Sbjct: 61  QESSSMWDFDEDPPPPPRRRRGRGGGGDYAEPATAAAAAAAATSLMEAEEYGEMMESVDE 120

Query: 121 ANFALDGLRATAPRRVRRASFLALLGICASAPRRRVLRAQGLVQQIIDAILVLNIDDPPC 180
           ANFALDGLRATAPRRVRRASFLALLGICASAPRRRVLRAQGLVQQIIDAILVLNIDDPPC
Sbjct: 121 ANFALDGLRATAPRRVRRASFLALLGICASAPRRRVLRAQGLVQQIIDAILVLNIDDPPC 180

Query: 181 TIGAAALLFVLASDVQENHLLDSESCVHFXXXXXXXXXXXXDSKAPSIGSKLLGISKVQM 240
           TIGAAALLFVLASDVQENHLLDSESCVHF            DSKAPSIGSKLLGISKVQM
Sbjct: 181 TIGAAALLFVLASDVQENHLLDSESCVHFLLKLLNPPVNLVDSKAPSIGSKLLGISKVQM 240

Query: 241 LNGSNKDSDCISEEILSKVEEILLSCQEIKSLDKDDKKTTRPELCPKWLALLTMEKACLS 300
           LNGSNKDSDCISEEILSKVEEILLSCQEIKSLDKDDKKTTRPELCPKWLALLTMEKACLS
Sbjct: 241 LNGSNKDSDCISEEILSKVEEILLSCQEIKSLDKDDKKTTRPELCPKWLALLTMEKACLS 300

Query: 301 AVSVEETSDTVSRVGGNFKETLRELGGLDSIFDVMMDCHSTLENLIKDTSTSALDLNEGT 360
           AVSVEETSDTVSRVGGNFKETLRELGGLDSIFDVMMDCHSTLENLIKDTSTSALDLNEGT
Sbjct: 301 AVSVEETSDTVSRVGGNFKETLRELGGLDSIFDVMMDCHSTLENLIKDTSTSALDLNEGT 360

Query: 361 SLQSAALLLKCLKILENATFLSDDNKTHLLNMSRKLYPKRSSLSFVGVXXXXXXXXXXXX 420
           SLQSAALLLKCLKILENATFLSDDNKTHLLNMSRKLYPKRSSLSFVGV            
Sbjct: 361 SLQSAALLLKCLKILENATFLSDDNKTHLLNMSRKLYPKRSSLSFVGVIISIIELLSALS 420

Query: 421 XXQNXXXXXXXXXXXXXXXXQQSCSDVMGGTSFNDGKRXXXXXXXXXXXQTRHSCLSSKS 480
             QN                QQSCSDVMGGTSFNDGKR           QTRHSCLSSKS
Sbjct: 421 ILQNSSVVSSSTYPKSSKVSQQSCSDVMGGTSFNDGKRKNSKKKNLLSNQTRHSCLSSKS 480

Query: 481 EVSHITISSGSDAGLSQKAFNCXXXXXXXXXXXXXXXERHSNGGALKLNIKKDRGNANPI 540
           EVSHITISSGSDAGLSQKAFNC               ERHSNGGALKLNIKKDRGNANPI
Sbjct: 481 EVSHITISSGSDAGLSQKAFNCSPSISSNGASSGSLGERHSNGGALKLNIKKDRGNANPI 540

Query: 541 RGSSGWISIRAHSSDGNSREMAKRRRLSENVITDSGGGDDPFAFDDVDQEPSNWELLGPK 600
           RGSSGWISIRAHSSDGNSREMAKRRRLSENVITDSGGGDDPFAFDDVDQEPSNWELLGPK
Sbjct: 541 RGSSGWISIRAHSSDGNSREMAKRRRLSENVITDSGGGDDPFAFDDVDQEPSNWELLGPK 600

Query: 601 KKSPQKHQDKSGNGVLVASHEPDQPEDLNQSGTTSLFSAKDESSLLEDCLLASVKVLMNL 660
           KKSPQKHQDKSGNGVLVASHEPDQPEDLNQSGTTSLFSAKDESSLLEDCLLASVKVLMNL
Sbjct: 601 KKSPQKHQDKSGNGVLVASHEPDQPEDLNQSGTTSLFSAKDESSLLEDCLLASVKVLMNL 660

Query: 661 ANDNPSGCELIASCGGLNTMASLIMKHFPSFCFVVDNNYNTRDVNLDHELSSSQNSKAHQ 720
           ANDNPSGCELIASCGGLNTMASLIMKHFPSFCFVVDNNYNTRDVNLDHELSSSQNSKAHQ
Sbjct: 661 ANDNPSGCELIASCGGLNTMASLIMKHFPSFCFVVDNNYNTRDVNLDHELSSSQNSKAHQ 720

Query: 721 VKIKQLRDHELDFLVAILGLLVNLVEKDSLNRVRLSSARVPVDLSQNPQSEETQRDVIAL 780
           VKIKQLRDHELDFLVAILGLLVNLVEKDSLNRVRLSSARVPVDLSQNPQSEETQRDVIAL
Sbjct: 721 VKIKQLRDHELDFLVAILGLLVNLVEKDSLNRVRLSSARVPVDLSQNPQSEETQRDVIAL 780

Query: 781 LCSVFLASQGASEASGTISPDDEESLMQGAREAEMMIVEAYAALLLAFLSTESMKVRGAI 840
           LCSVFLASQGASEASGTISPDDEESLMQGAREAEMMIVEAYAALLLAFLSTESMKVRGAI
Sbjct: 781 LCSVFLASQGASEASGTISPDDEESLMQGAREAEMMIVEAYAALLLAFLSTESMKVRGAI 840

Query: 841 SSCLPNNSLKILVPALEKFVSFHLQLNMITEETHSAVTEVIEKCKLS 887
           SSCLPNNSLKILVPALEKFVSFHLQLNMITEETHSAVTEVIEKCKLS
Sbjct: 841 SSCLPNNSLKILVPALEKFVSFHLQLNMITEETHSAVTEVIEKCKLS 887



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.130    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,774,679
Number of extensions: 909275
Number of successful extensions: 2418
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2417
Number of HSP's successfully gapped: 1
Length of query: 887
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 777
Effective length of database: 11,292,261
Effective search space: 8774086797
Effective search space used: 8774086797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 161 (66.6 bits)