BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0495500 Os10g0495500|J090008F03
         (380 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0495500  Protein of unknown function UPF0120 family pro...   704   0.0  
Os12g0163200  Protein of unknown function UPF0120 family pro...    92   5e-19

>Os10g0495500 Protein of unknown function UPF0120 family protein
          Length = 380

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/380 (90%), Positives = 345/380 (90%)

Query: 1   MSDSDEYVDLPVSXXXXXXXXXXXXXXXKVGSRKKAKVHAKQLKRLQEKDPEFYKYXXXX 60
           MSDSDEYVDLPVS               KVGSRKKAKVHAKQLKRLQEKDPEFYKY    
Sbjct: 1   MSDSDEYVDLPVSDEEEWEDGESEEDEEKVGSRKKAKVHAKQLKRLQEKDPEFYKYLEEC 60

Query: 61  XXXXXXXXXXXXXXXXGSAEKHSSVPKEEPKEIVKPITMQMVDSWCQGAEDGKIGSIRSI 120
                           GSAEKHSSVPKEEPKEIVKPITMQMVDSWCQGAEDGKIGSIRSI
Sbjct: 61  DKELLEFDDDDFDDNEGSAEKHSSVPKEEPKEIVKPITMQMVDSWCQGAEDGKIGSIRSI 120

Query: 121 LEAFRKACHYGEESGNNSAPKFSVMSGSVLDKVMHFVLKNMDRILRELLDAPSFGGKKET 180
           LEAFRKACHYGEESGNNSAPKFSVMSGSVLDKVMHFVLKNMDRILRELLDAPSFGGKKET
Sbjct: 121 LEAFRKACHYGEESGNNSAPKFSVMSGSVLDKVMHFVLKNMDRILRELLDAPSFGGKKET 180

Query: 181 VSELMITKQWKRHGRLMRLYLVNALHMITELTDEQMVAFTVHRVRASAVFLAAFPALLRK 240
           VSELMITKQWKRHGRLMRLYLVNALHMITELTDEQMVAFTVHRVRASAVFLAAFPALLRK
Sbjct: 181 VSELMITKQWKRHGRLMRLYLVNALHMITELTDEQMVAFTVHRVRASAVFLAAFPALLRK 240

Query: 241 YVKKSYQKVYDWQYIFCLELWTSVVCGCSSEEDLRPLAYPLTQIIHGVACLVPSARYFPV 300
           YVKKSYQKVYDWQYIFCLELWTSVVCGCSSEEDLRPLAYPLTQIIHGVACLVPSARYFPV
Sbjct: 241 YVKKSYQKVYDWQYIFCLELWTSVVCGCSSEEDLRPLAYPLTQIIHGVACLVPSARYFPV 300

Query: 301 RLRCVKMLNRIAEATGTFIPVSSLLLDMLEMKELGGKPDAVGKAVNLFSVKQVYFLVIQH 360
           RLRCVKMLNRIAEATGTFIPVSSLLLDMLEMKELGGKPDAVGKAVNLFSVKQVYFLVIQH
Sbjct: 301 RLRCVKMLNRIAEATGTFIPVSSLLLDMLEMKELGGKPDAVGKAVNLFSVKQVYFLVIQH 360

Query: 361 FLWEDYFEKTFNRYFCLAGR 380
           FLWEDYFEKTFNRYFCLAGR
Sbjct: 361 FLWEDYFEKTFNRYFCLAGR 380



>Os12g0163200 Protein of unknown function UPF0120 family protein
          Length = 669

 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 63/111 (56%)

Query: 243 KKSYQKVYDWQYIFCLELWTSVVCGCSSEEDLRPLAYPLTQIIHGVACLVPSARYFPVRL 302
           K+  +KV +WQYI C+ LW   +C    + ++ PL   + QII GVA L P  RY P+RL
Sbjct: 438 KEDLRKVDNWQYINCVNLWVRFLCCNYKDYNMHPLLSSVVQIIRGVAHLFPGTRYLPLRL 497

Query: 303 RCVKMLNRIAEATGTFIPVSSLLLDMLEMKELGGKPDAVGKAVNLFSVKQV 353
           R V+MLN ++  +  F P+ SLL D LE ++   K       VN  S+ +V
Sbjct: 498 RLVQMLNELSSCSQMFFPIPSLLFDCLEFRDTSQKEQGKKAKVNFSSLLKV 548




 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 86/150 (57%), Gaps = 5/150 (3%)

Query: 95  KPITMQMVDSWCQ-GAEDGKIGSIRSILEAFRKACHYGEESGNNSAPKFSVMSGSVLDKV 153
           K +T + +  WCQ  A++ K  S+RS+L A+R AC +G    + S     + S  V  ++
Sbjct: 193 KILTRKTISEWCQLVAKEPKAPSLRSLLNAYRDACRFG---VSKSPSVQRIQSTEVFHQI 249

Query: 154 MHFVLKNMDRILRELLDAPSFGGKKETVSELMITKQWKRHGRLMRLYLVNALHMITELTD 213
           + FVL   D I   LL+  S    K  +  L   K+WK    L++ YL N+L ++++LTD
Sbjct: 250 ITFVLSEADNIFHALLEI-SDDVNKGKIMNLRSAKKWKTIEPLVKSYLQNSLDLLSQLTD 308

Query: 214 EQMVAFTVHRVRASAVFLAAFPALLRKYVK 243
            Q++AF + R+RASAV  +A+P+  R+ +K
Sbjct: 309 NQILAFVLTRLRASAVLFSAYPSTSRRLLK 338



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,332,069
Number of extensions: 421730
Number of successful extensions: 804
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 802
Number of HSP's successfully gapped: 3
Length of query: 380
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 277
Effective length of database: 11,657,759
Effective search space: 3229199243
Effective search space used: 3229199243
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)