BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0486300 Os10g0486300|Os10g0486300
         (278 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0486300  Zinc finger, C2H2-type domain containing protein    334   4e-92

>Os10g0486300 Zinc finger, C2H2-type domain containing protein
          Length = 278

 Score =  334 bits (856), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 178/260 (68%), Positives = 178/260 (68%)

Query: 1   MAAPLPDAVKEEDEGNMDSFQSGQTIIGQDDFMAIFRNDKPLCELLMKIGQRTXXXXXXX 60
           MAAPLPDAVKEEDEGNMDSFQSGQTIIGQDDFMAIFRNDKPLCELLMKIGQRT       
Sbjct: 1   MAAPLPDAVKEEDEGNMDSFQSGQTIIGQDDFMAIFRNDKPLCELLMKIGQRTSGSSGAK 60

Query: 61  XXXXXXIVHLHGLIPDELCKIDHRPALSDFLSXXXXXXXXXXXXXHGACVKRPAIGPPPG 120
                 IVHLHGLIPDELCKIDHRPALSDFLS             HGACVKRPAIGPPPG
Sbjct: 61  PAAPPPIVHLHGLIPDELCKIDHRPALSDFLSAQQQQQQPPPPAQHGACVKRPAIGPPPG 120

Query: 121 FAGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSGVXXXXXXXXXXLSIMRK 180
           FAGV                                    LSGV          LSIMRK
Sbjct: 121 FAGVRQPPQKQQQLPPPPRRRAQQQPASAAAHHRNPNRHHLSGVAAPPAAAANALSIMRK 180

Query: 181 XXXXXXXXXXLYCGVCNVKCMTRFNLREHEAGRKHRDKVASNAGEKNVRCQLCDVLLASE 240
                     LYCGVCNVKCMTRFNLREHEAGRKHRDKVASNAGEKNVRCQLCDVLLASE
Sbjct: 181 AAAAGGGGAALYCGVCNVKCMTRFNLREHEAGRKHRDKVASNAGEKNVRCQLCDVLLASE 240

Query: 241 LNVAQHYAGKQHLHRLRLSR 260
           LNVAQHYAGKQHLHRLRLSR
Sbjct: 241 LNVAQHYAGKQHLHRLRLSR 260



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.139    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,560,915
Number of extensions: 194952
Number of successful extensions: 523
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 521
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 178
Effective length of database: 11,814,401
Effective search space: 2102963378
Effective search space used: 2102963378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 155 (64.3 bits)