Os10g0486300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, C2H2-type domain containing protein.
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Os10g0486300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, C2H2-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 166.01 | 0.605 | 6.35 | 0.603 | 1.01 | 0.937 | 0.404 | -1.08 | 0.755 | 4 | 29.8 | 115 | -- | -- |
| 168.77 | 0.605 | 6.35 | 0.641 | 1.1 | 0.933 | -0.172 | -- | 0.783 | 3.55 | 41.98 | 121 | -- | -- |
| 166.3 | 0.601 | 6.35 | 0.606 | 1 | 0.931 | -- | -0.863 | 0.753 | 3.93 | 30 | 121 | -- | -- |
| 168.88 | 0.605 | 6.36 | 0.599 | 1.06 | 0.955 | -- | -- | 0.742 | 3.71 | 40 | 114 | -- | -- |
| 175.54 | 0.617 | 6.37 | 0.585 | -- | 1.51 | -- | -0.739 | 0.752 | -- | 10.21 | 329 | -- | -- |
| 182.45 | 0.633 | 6.38 | 0.556 | 1.66 | -- | -0.504 | -- | 0.683 | 2.64 | -- | -- | -- | -- |
| 183.34 | 0.634 | 6.38 | 0.569 | 1.66 | -- | -- | -- | 0.686 | 2.66 | -- | -- | -- | -- |
| 177.84 | 0.621 | 6.37 | 0.586 | -- | 1.5 | -- | -- | 0.748 | -- | 10 | 329 | -- | -- |
| 177.73 | 0.621 | 6.37 | -- | 1.14 | 1.08 | -- | -- | 0.679 | 3.59 | 72.96 | 113 | -- | -- |
| 344.86 | 0.868 | 6.37 | 0.64 | -- | -- | -- | -- | 0.728 | -- | -- | -- | -- | -- |
| 191.86 | 0.648 | 6.39 | -- | 1.67 | -- | -- | -- | 0.623 | 2.66 | -- | -- | -- | -- |
| 186.86 | 0.637 | 6.38 | -- | -- | 1.51 | -- | -- | 0.684 | -- | 10 | 333 | -- | -- |
| 355.65 | 0.88 | 6.39 | -- | -- | -- | -- | -- | 0.657 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 164.54 | humidity | 60 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 2 | 165.04 | radiation | 30 | 90 | < th | dose independent | rect. | 3 | 10 |
| 3 | 165.06 | humidity | 90 | 90 | < th | dose dependent | rect. | 6 | 10 |
| 6 | 165.21 | radiation | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 8 | 165.37 | humidity | 80 | 30 | < th | dose independent | rect. | 8 | 10 |
| 14 | 165.62 | radiation | 40 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 17 | 165.66 | humidity | 60 | 90 | > th | dose dependent | sin | 1 | NA |
| 25 | 165.92 | radiation | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 30 | 166.08 | humidity | 60 | 90 | > th | dose dependent | rect. | 3 | 12 |
| 33 | 166.15 | radiation | 20 | 90 | < th | dose independent | rect. | 3 | 22 |
| 35 | 166.21 | humidity | 60 | 90 | > th | dose dependent | rect. | 3 | 14 |
| 36 | 166.23 | humidity | 90 | 10 | < th | dose dependent | rect. | 6 | 12 |
| 59 | 166.57 | radiation | 30 | 90 | < th | dose dependent | no | NA | NA |
| 65 | 166.58 | humidity | 80 | 30 | < th | dose dependent | rect. | 19 | 21 |
| 87 | 166.87 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 24 | 19 |
| 88 | 166.88 | radiation | 20 | 90 | < th | dose independent | rect. | 16 | 23 |
| 91 | 166.92 | radiation | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 93 | 166.94 | humidity | 60 | 10 | > th | dose dependent | rect. | 4 | 16 |
| 145 | 167.33 | radiation | 20 | 90 | < th | dose independent | rect. | 7 | 23 |
| 156 | 167.41 | radiation | 30 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 181 | 167.55 | humidity | 90 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 221 | 167.75 | humidity | 80 | 90 | > th | dose independent | rect. | 3 | 16 |
| 224 | 167.77 | radiation | 1 | 90 | > th | dose dependent | rect. | 6 | 12 |
| 238 | 167.79 | radiation | 20 | 90 | < th | dose independent | no | NA | NA |
| 255 | 167.87 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 13 |
| 264 | 167.88 | radiation | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 268 | 167.92 | radiation | 1 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 276 | 167.97 | humidity | 90 | 90 | < th | dose dependent | sin | 1 | NA |
| 296 | 168.03 | humidity | 80 | 10 | < th | dose independent | rect. | 23 | 19 |
| 308 | 168.08 | radiation | 40 | 90 | < th | dose dependent | sin | 2 | NA |
| 318 | 168.13 | humidity | 80 | 30 | > th | dose independent | sin | 0 | NA |
| 322 | 168.14 | humidity | 80 | 10 | < th | dose independent | rect. | 2 | 16 |
| 325 | 168.14 | radiation | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 352 | 168.20 | radiation | 1 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 371 | 168.24 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 443 | 168.31 | radiation | 20 | 90 | < th | dose independent | rect. | 9 | 23 |
| 468 | 168.38 | radiation | 10 | 90 | > th | dose independent | rect. | 17 | 23 |
| 481 | 168.42 | radiation | 10 | 90 | > th | dose independent | rect. | 6 | 10 |
| 513 | 168.48 | radiation | 20 | 90 | < th | dose independent | rect. | 13 | 23 |
| 520 | 168.49 | humidity | 60 | 10 | > th | dose dependent | rect. | 4 | 13 |
| 539 | 168.54 | radiation | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 565 | 168.61 | radiation | 30 | 90 | < th | dose dependent | sin | 22 | NA |
| 636 | 168.84 | humidity | 80 | 10 | > th | dose independent | rect. | 4 | 16 |
| 684 | 168.95 | radiation | 20 | 30 | > th | dose independent | rect. | 15 | 23 |
| 769 | 169.15 | humidity | 80 | 10 | > th | dose independent | rect. | 4 | 14 |
| 784 | 169.18 | radiation | 1 | 90 | > th | dose dependent | sin | 0 | NA |
| 787 | 169.19 | radiation | 20 | 90 | < th | dose independent | sin | 21 | NA |
| 807 | 169.23 | humidity | 50 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 808 | 169.24 | radiation | 30 | 90 | < th | dose dependent | rect. | 20 | 23 |
| 826 | 169.30 | humidity | 90 | 10 | < th | dose dependent | rect. | 6 | 15 |
| 857 | 169.38 | humidity | 60 | 90 | > th | dose dependent | rect. | 3 | 22 |
| 871 | 169.42 | humidity | 80 | 30 | < th | dose independent | rect. | 19 | 23 |
| 882 | 169.45 | radiation | 20 | 270 | < th | dose independent | sin | 5 | NA |
| 902 | 169.51 | radiation | 20 | 90 | < th | dose independent | rect. | 9 | 14 |
| 905 | 169.51 | humidity | 80 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 907 | 169.52 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 922 | 169.55 | radiation | 20 | 90 | < th | dose independent | rect. | 3 | 16 |
| 929 | 169.57 | radiation | 1 | 270 | > th | dose dependent | sin | 4 | NA |
| 934 | 169.58 | humidity | 70 | 10 | > th | dose independent | rect. | 3 | 23 |
| 969 | 169.61 | radiation | 40 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 975 | 169.62 | radiation | 1 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 977 | 169.63 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 7 |