BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0479600 Os10g0479600|AK063255
         (116 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0479600  Protein Transporter, Pam16 family protein           243   3e-65
Os01g0960800  Protein Transporter, Pam16 family protein           176   4e-45

>Os10g0479600 Protein Transporter, Pam16 family protein
          Length = 116

 Score =  243 bits (619), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 116/116 (100%), Positives = 116/116 (100%)

Query: 1   MAGKLIANLIVMGSGIIGRAMLQAYRKALDNANKTGVAHETINNIRRASKTMTEQEARQI 60
           MAGKLIANLIVMGSGIIGRAMLQAYRKALDNANKTGVAHETINNIRRASKTMTEQEARQI
Sbjct: 1   MAGKLIANLIVMGSGIIGRAMLQAYRKALDNANKTGVAHETINNIRRASKTMTEQEARQI 60

Query: 61  LGVSEQSTWEEIAQRYDNLFERNAKSGSFYLQSKVHRAKECLENVYQKNKQDGTPP 116
           LGVSEQSTWEEIAQRYDNLFERNAKSGSFYLQSKVHRAKECLENVYQKNKQDGTPP
Sbjct: 61  LGVSEQSTWEEIAQRYDNLFERNAKSGSFYLQSKVHRAKECLENVYQKNKQDGTPP 116



>Os01g0960800 Protein Transporter, Pam16 family protein
          Length = 113

 Score =  176 bits (445), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 81/108 (75%), Positives = 95/108 (87%)

Query: 1   MAGKLIANLIVMGSGIIGRAMLQAYRKALDNANKTGVAHETINNIRRASKTMTEQEARQI 60
           MA +L+ANL+V+G  ++GRA +QAYR+A+ NANKTG A E IN IRRASK MTEQEARQI
Sbjct: 1   MAARLLANLLVIGGTVLGRAAVQAYRQAIVNANKTGAAQEAINGIRRASKAMTEQEARQI 60

Query: 61  LGVSEQSTWEEIAQRYDNLFERNAKSGSFYLQSKVHRAKECLENVYQK 108
           LG+SE+STWEEI Q+YD +FERNAK+GSFYLQSKVHRAKECLE VYQK
Sbjct: 61  LGISEKSTWEEIVQKYDTMFERNAKNGSFYLQSKVHRAKECLEAVYQK 108



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.127    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,420,937
Number of extensions: 106030
Number of successful extensions: 254
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 2
Length of query: 116
Length of database: 17,035,801
Length adjustment: 83
Effective length of query: 33
Effective length of database: 12,702,039
Effective search space: 419167287
Effective search space used: 419167287
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 149 (62.0 bits)