BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0478500 Os10g0478500|Os10g0478500
         (685 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0478500  TRAF-like domain containing protein                1432   0.0  
Os12g0597050                                                       68   2e-11

>Os10g0478500 TRAF-like domain containing protein
          Length = 685

 Score = 1432 bits (3706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 685/685 (100%), Positives = 685/685 (100%)

Query: 1   MTVLPLLLVCFTSIKPPLVPRASPPTSARKRRCCDCECEIIKNPIELGFLIKICTVVEDP 60
           MTVLPLLLVCFTSIKPPLVPRASPPTSARKRRCCDCECEIIKNPIELGFLIKICTVVEDP
Sbjct: 1   MTVLPLLLVCFTSIKPPLVPRASPPTSARKRRCCDCECEIIKNPIELGFLIKICTVVEDP 60

Query: 61  HVTNIFFLSEMCNIVQVPSSALLAEDGFHLQVIPKKTKCWETIWSRSFIMLHRKNGFFHF 120
           HVTNIFFLSEMCNIVQVPSSALLAEDGFHLQVIPKKTKCWETIWSRSFIMLHRKNGFFHF
Sbjct: 61  HVTNIFFLSEMCNIVQVPSSALLAEDGFHLQVIPKKTKCWETIWSRSFIMLHRKNGFFHF 120

Query: 121 FRKRSTDALLVKIHNPVFLWKVYGFSALLQRGALAAKSAAFHCSGYNWYLKVSPMHKTLG 180
           FRKRSTDALLVKIHNPVFLWKVYGFSALLQRGALAAKSAAFHCSGYNWYLKVSPMHKTLG
Sbjct: 121 FRKRSTDALLVKIHNPVFLWKVYGFSALLQRGALAAKSAAFHCSGYNWYLKVSPMHKTLG 180

Query: 181 DGTPHVALSLVLSRLSFKPDYTMNAVFVLSMYNHSKGNFLVVKEVLFLQKKKFVSVQNLF 240
           DGTPHVALSLVLSRLSFKPDYTMNAVFVLSMYNHSKGNFLVVKEVLFLQKKKFVSVQNLF
Sbjct: 181 DGTPHVALSLVLSRLSFKPDYTMNAVFVLSMYNHSKGNFLVVKEVLFLQKKKFVSVQNLF 240

Query: 241 LQKKDFTKGDYTWTMNNFPELDLKPSVLSPAFEIGRRKWFIRMYPRGDEYSTNSLSMYLF 300
           LQKKDFTKGDYTWTMNNFPELDLKPSVLSPAFEIGRRKWFIRMYPRGDEYSTNSLSMYLF
Sbjct: 241 LQKKDFTKGDYTWTMNNFPELDLKPSVLSPAFEIGRRKWFIRMYPRGDEYSTNSLSMYLF 300

Query: 301 PQSWDKLLPEPGMMIELTLSILNQNNAQLHKVSGRFVFASKNGWGWSNFIALNKLKDLVG 360
           PQSWDKLLPEPGMMIELTLSILNQNNAQLHKVSGRFVFASKNGWGWSNFIALNKLKDLVG
Sbjct: 301 PQSWDKLLPEPGMMIELTLSILNQNNAQLHKVSGRFVFASKNGWGWSNFIALNKLKDLVG 360

Query: 361 SSCIVKADITIIGSSSESQIVYMLRLIYWRRDLKRELEERTMGNVAGRAAGALLFCITAD 420
           SSCIVKADITIIGSSSESQIVYMLRLIYWRRDLKRELEERTMGNVAGRAAGALLFCITAD
Sbjct: 361 SSCIVKADITIIGSSSESQIVYMLRLIYWRRDLKRELEERTMGNVAGRAAGALLFCITAD 420

Query: 421 DPDPRFMASLRYFSEEPHQSPLICSTTVGTPGLKEDIVVDTTFELSIYNHSRRTHHGTRA 480
           DPDPRFMASLRYFSEEPHQSPLICSTTVGTPGLKEDIVVDTTFELSIYNHSRRTHHGTRA
Sbjct: 421 DPDPRFMASLRYFSEEPHQSPLICSTTVGTPGLKEDIVVDTTFELSIYNHSRRTHHGTRA 480

Query: 481 SYKFHYPKYYSEYTYLIPLSKLQDGSDFLADDTCVFGLDILRARKFKPTRNAKGVTIQHV 540
           SYKFHYPKYYSEYTYLIPLSKLQDGSDFLADDTCVFGLDILRARKFKPTRNAKGVTIQHV
Sbjct: 481 SYKFHYPKYYSEYTYLIPLSKLQDGSDFLADDTCVFGLDILRARKFKPTRNAKGVTIQHV 540

Query: 541 FLQTKGFMQGNYTWNIEDSKLDLKSIICSPKFDIGEHKWYLRVDPYGDYRNRDYVSIYLC 600
           FLQTKGFMQGNYTWNIEDSKLDLKSIICSPKFDIGEHKWYLRVDPYGDYRNRDYVSIYLC
Sbjct: 541 FLQTKGFMQGNYTWNIEDSKLDLKSIICSPKFDIGEHKWYLRVDPYGDYRNRDYVSIYLC 600

Query: 601 LDDNSNMPPIESAIMAEFIISILNQKNGKHSQQKARTVFSCKGIAWGWHKFIRRDQMKNT 660
           LDDNSNMPPIESAIMAEFIISILNQKNGKHSQQKARTVFSCKGIAWGWHKFIRRDQMKNT
Sbjct: 601 LDDNSNMPPIESAIMAEFIISILNQKNGKHSQQKARTVFSCKGIAWGWHKFIRRDQMKNT 660

Query: 661 NAGFVVGSSWTVQAEVTVIGSSSHA 685
           NAGFVVGSSWTVQAEVTVIGSSSHA
Sbjct: 661 NAGFVVGSSWTVQAEVTVIGSSSHA 685



>Os12g0597050 
          Length = 249

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 74/128 (57%), Gaps = 7/128 (5%)

Query: 249 GDYTWTMNNFPELDLKPSVLSPAFEIGRRKWFIRMYPRGDEYSTNSLSMYLFPQSWDKLL 308
           G +TW ++NF +++ K  + S +F++G  KW+I +YP+G +   N LS++L   + DKLL
Sbjct: 70  GKFTWRIDNFSQIN-KRELRSNSFDVGGYKWYILIYPQGCDV-CNHLSLFLCVANHDKLL 127

Query: 309 PEPGMMIELTLSILNQN--NAQLHKVSGRFVFASKNGWGWSNFIALNKLKD--LVGSSCI 364
           P      + T++++N++   ++      RF +  ++ WGW  F+ L KL +  +V     
Sbjct: 128 PGWSHFAQFTIAVINRDPKKSKYSDTLHRF-WKKEHDWGWKKFMELTKLHEGFVVDDVLT 186

Query: 365 VKADITII 372
           +KA + +I
Sbjct: 187 IKAQVQVI 194



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 24,082,162
Number of extensions: 1015797
Number of successful extensions: 2111
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2105
Number of HSP's successfully gapped: 5
Length of query: 685
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 577
Effective length of database: 11,396,689
Effective search space: 6575889553
Effective search space used: 6575889553
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 159 (65.9 bits)