FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0478500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TRAF-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.24 (0.0561) R2 : 0.0864
β1 : 0.631 (0.192) R2dD : 0.0235 R2D : -0.024
β2 : -- (--) R2dC : -- R2C : --
β3 : 17.5 (3.25) R2dE : 2.21 R2E : -2.11
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 35.7 (6.76) R2dD*E : 2.09 R2D*E : -2.1
γ1 : -0.228 (0.108) R2dN8 : 0.013 R2N8 : -0.00267
σ : 0.941
deviance : 408.56
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1016
memory length : 1571
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
399.08 0.939 3.21 0.518 0.00556 13 2.05 26.2 -0.233 6.83 1016 1598 -- --
422.07 0.964 3.11 0.327 0.0445 -0.596 2.22 -- -0.259 7.14 1016 1598 -- --
408.41 0.941 3.23 0.604 0.0658 16.4 -- 33.2 -0.244 10.4 1016 1566 -- --
430.7 0.967 3.1 0.439 0.117 0.771 -- -- -0.207 10.8 1010 1355 -- --
408.56 0.941 3.24 0.631 -- 17.5 -- 35.7 -0.228 -- 1016 1571 -- --
423.08 0.964 3.11 0.32 0.0533 -- 2.23 -- -0.254 7.2 -- -- -- --
435.49 0.977 3.11 0.371 0.125 -- -- -- -0.256 11.6 -- -- -- --
430.98 0.967 3.1 0.456 -- 0.817 -- -- -0.207 -- 1010 1596 -- --
435.55 0.972 3.11 -- 0.108 0.666 -- -- -0.262 10.9 1010 1543 -- --
436.48 0.976 3.11 0.368 -- -- -- -- -0.258 -- -- -- -- --
439.12 0.98 3.12 -- 0.121 -- -- -- -0.297 11.4 -- -- -- --
436.29 0.973 3.12 -- -- 0.694 -- -- -0.265 -- 1010 1559 -- --
440.04 0.979 3.12 -- -- -- -- -- -0.298 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 394.35 atmosphere 1010 270 > th dose dependent rect. 5 3
8 397.20 atmosphere 1010 270 > th dose independent rect. 5 3
13 397.26 atmosphere 1015 1440 > th dose dependent rect. 10 10
27 397.28 atmosphere 1015 1440 > th dose dependent rect. 10 7
73 397.43 atmosphere 1015 1440 > th dose dependent sin 1 NA
120 398.42 atmosphere 1015 1440 > th dose independent rect. 10 3
129 398.47 atmosphere 1015 1440 < th dose independent rect. 9 2
132 398.51 atmosphere 1015 1440 < th dose independent rect. 2 11
135 398.53 atmosphere 1015 1440 < th dose independent rect. 9 4
144 398.59 atmosphere 1015 1440 < th dose independent rect. 4 7
168 398.97 atmosphere 1015 1440 > th dose independent rect. 10 10
183 398.99 atmosphere 1015 1440 > th dose independent rect. 10 1
231 399.07 atmosphere 1015 1440 > th dose independent sin 2 NA
330 399.65 atmosphere 1010 90 > th dose dependent rect. 8 3
339 399.67 atmosphere 1010 90 > th dose dependent rect. 8 1
362 400.26 atmosphere 1000 90 < th dose independent rect. 24 1
382 400.39 atmosphere 1015 1440 < th dose independent sin 2 NA
383 400.40 atmosphere 1015 1440 < th dose independent rect. 9 9
385 400.42 atmosphere 1015 1440 < th dose independent rect. 4 14
406 400.57 atmosphere 1000 90 < th dose dependent rect. 24 1
529 401.76 wind 1 270 < th dose dependent rect. 15 8
563 402.87 wind 1 270 < th dose dependent rect. 21 1
567 403.10 wind 1 270 < th dose dependent rect. 20 3
572 403.38 wind 1 270 < th dose independent rect. 21 1
583 403.80 wind 1 90 < th dose dependent rect. 8 16
584 403.81 wind 1 270 < th dose independent rect. 20 3
587 403.86 atmosphere 1010 720 > th dose dependent rect. 1 1
597 404.12 temperature 20 270 < th dose dependent rect. 12 6
616 404.47 wind 3 30 > th dose independent rect. 6 1
651 404.70 atmosphere 1015 1440 < th dose independent rect. 13 1
660 404.88 wind 1 270 < th dose independent rect. 14 9
675 405.25 wind 5 14400 < th dose independent rect. 23 1
678 405.34 temperature 20 10 < th dose independent rect. 16 4
679 405.34 temperature 25 270 < th dose dependent rect. 16 1
707 405.63 humidity 90 270 > th dose dependent rect. 15 2
716 405.78 humidity 90 270 > th dose independent rect. 16 1
724 405.95 wind 5 14400 > th dose independent rect. 23 1
728 406.01 temperature 20 90 < th dose dependent rect. 16 4
735 406.17 temperature 20 10 < th dose dependent rect. 16 4
752 406.48 humidity 90 270 > th dose dependent rect. 11 7
761 406.60 temperature 20 270 < th dose independent rect. 11 8
771 406.72 atmosphere 1000 90 < th dose independent rect. 21 5
827 407.56 temperature 25 90 > th dose independent rect. 6 1
829 407.61 temperature 20 10 < th dose dependent rect. 12 9
835 407.66 atmosphere 1000 10 < th dose independent rect. 6 2
836 407.66 atmosphere 1000 10 < th dose dependent rect. 6 2
848 407.80 atmosphere 1000 10 < th dose independent rect. 21 6
869 407.89 atmosphere 1000 90 < th dose dependent rect. 6 1
872 407.90 atmosphere 1000 90 < th dose independent rect. 6 1
883 407.94 temperature 25 90 > th dose dependent rect. 5 2
896 408.02 atmosphere 1000 270 < th dose independent rect. 21 2
918 408.09 wind 1 30 < th dose dependent rect. 21 3
943 408.28 wind 3 90 < th dose dependent sin 20 NA
967 408.41 temperature 25 90 > th dose independent rect. 5 3
971 408.45 wind 1 90 < th dose independent rect. 8 16
984 408.56 wind 1 10 > th dose dependent rect. 5 2
989 408.60 humidity 90 1440 > th dose dependent rect. 2 2