BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0460500 Os10g0460500|AK070542
(307 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0460500 Conserved hypothetical protein 586 e-168
Os12g0508900 Hypothetical protein 109 2e-24
>Os10g0460500 Conserved hypothetical protein
Length = 307
Score = 586 bits (1510), Expect = e-168, Method: Compositional matrix adjust.
Identities = 280/280 (100%), Positives = 280/280 (100%)
Query: 28 MPLDGEITERISTLRMANTPRTERLRRNLASLVLRQALQGVYSEILGGYIQSYELDYQDQ 87
MPLDGEITERISTLRMANTPRTERLRRNLASLVLRQALQGVYSEILGGYIQSYELDYQDQ
Sbjct: 28 MPLDGEITERISTLRMANTPRTERLRRNLASLVLRQALQGVYSEILGGYIQSYELDYQDQ 87
Query: 88 DGCSFVQGRIFMESPRSGEEGFIQHDATFVVMDEDYETGRIMAQKIYDTTIKFHGYNDVI 147
DGCSFVQGRIFMESPRSGEEGFIQHDATFVVMDEDYETGRIMAQKIYDTTIKFHGYNDVI
Sbjct: 88 DGCSFVQGRIFMESPRSGEEGFIQHDATFVVMDEDYETGRIMAQKIYDTTIKFHGYNDVI 147
Query: 148 ADIYLVAYCETLGKWVIGYEPFCQYWLESTLAPFYESDTTISAYWRDKIREMTESISYLC 207
ADIYLVAYCETLGKWVIGYEPFCQYWLESTLAPFYESDTTISAYWRDKIREMTESISYLC
Sbjct: 148 ADIYLVAYCETLGKWVIGYEPFCQYWLESTLAPFYESDTTISAYWRDKIREMTESISYLC 207
Query: 208 TRKVSHGGLANRESYVLDLDSKLKLINVARYSTDGSTTRDDVVDFFDLLCTEDRINASGN 267
TRKVSHGGLANRESYVLDLDSKLKLINVARYSTDGSTTRDDVVDFFDLLCTEDRINASGN
Sbjct: 208 TRKVSHGGLANRESYVLDLDSKLKLINVARYSTDGSTTRDDVVDFFDLLCTEDRINASGN 267
Query: 268 GNVEWEGFDYLIKSNSMYNTRFGEWKQANIEPPNFERPFS 307
GNVEWEGFDYLIKSNSMYNTRFGEWKQANIEPPNFERPFS
Sbjct: 268 GNVEWEGFDYLIKSNSMYNTRFGEWKQANIEPPNFERPFS 307
>Os12g0508900 Hypothetical protein
Length = 368
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 120/224 (53%), Gaps = 20/224 (8%)
Query: 71 EILGGYIQSYELDYQDQDGCSFVQGRIFMES-PRSGEEGFIQH-DATFVVMDEDYETGRI 128
I G+IQ YE D + D + G + +E P +GE I H +ATF+V+ E+GR
Sbjct: 6 HIRCGFIQGYEFDCERGD--AVAHGLVTVECDPDTGE---ISHREATFLVLRRG-ESGRR 59
Query: 129 MAQKIYDTTIKFHGYNDVIADIYLVAYCETLGKWVIGYEPFCQYW-------LESTLAPF 181
A ++++ T + G + IA+ +LVA C+ L +WVI YE + +T F
Sbjct: 60 DAVRMFEATCRLRG-SVAIANAFLVANCDGLKRWVICYEKLAGILSDYPDDHMLTTFGAF 118
Query: 182 YESDT-TISAYWRDKIREMTESISYLCTRKVSHGGLANRESYVLDLDSKLKLINVARYST 240
+ T ++S YW ++I+ + ++S + R VSHGG++N ESY L +KLIN+ + +
Sbjct: 119 SSNGTDSLSPYWSNQIKMIITTLSDMGIRNVSHGGMSNPESYALTESLDIKLINMGK-NE 177
Query: 241 DGSTTRDDVVDFFDLLCTEDRINASGNGNVEWEGFDYLIKSNSM 284
+ T + D+ DF LC I AS W GF +LI SN+M
Sbjct: 178 NSRTYQHDLADFGTFLCQTPYIGAS--KCTSWTGFHFLINSNAM 219
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,611,905
Number of extensions: 378774
Number of successful extensions: 732
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 730
Number of HSP's successfully gapped: 2
Length of query: 307
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 206
Effective length of database: 11,762,187
Effective search space: 2423010522
Effective search space used: 2423010522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)