Os10g0460500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0460500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 196.22 | 0.658 | 2.93 | -0.551 | 0.0918 | 18.4 | 0.508 | -71.7 | -0.147 | 8.16 | 79.98 | 90 | 2 | 4 |
| 220.9 | 0.698 | 2.87 | -0.318 | 0.1 | 1.58 | 0.387 | -- | -0.174 | 8.63 | 79.98 | 90 | 2 | 4 |
| 196.97 | 0.654 | 2.93 | -0.533 | 0.0956 | 18.1 | -- | -70.6 | -0.148 | 7.34 | 79.14 | 90 | 2 | 4.02 |
| 205.52 | 0.668 | 2.86 | -0.289 | 0.0859 | 2.66 | -- | -- | -0.159 | 8.95 | 84.88 | 140 | 2.17 | 3.31 |
| 197.44 | 0.654 | 2.93 | -0.532 | -- | 18.3 | -- | -71.1 | -0.146 | -- | 79.22 | 90 | 2.02 | 4.02 |
| 225.73 | 0.704 | 2.87 | -0.289 | 0.149 | -- | 0.321 | -- | -0.181 | 7.4 | -- | -- | -- | -- |
| 225.83 | 0.704 | 2.87 | -0.284 | 0.163 | -- | -- | -- | -0.183 | 6.09 | -- | -- | -- | -- |
| 205.87 | 0.668 | 2.87 | -0.292 | -- | 2.65 | -- | -- | -0.154 | -- | 84.77 | 140 | 2.2 | 3.32 |
| 207.74 | 0.671 | 2.86 | -- | 0.0856 | 2.66 | -- | -- | -0.126 | 8.6 | 84.95 | 140 | 2.15 | 3.32 |
| 227.2 | 0.704 | 2.87 | -0.28 | -- | -- | -- | -- | -0.179 | -- | -- | -- | -- | -- |
| 227.96 | 0.706 | 2.86 | -- | 0.158 | -- | -- | -- | -0.151 | 6.18 | -- | -- | -- | -- |
| 208.12 | 0.672 | 2.86 | -- | -- | 2.66 | -- | -- | -0.122 | -- | 84.64 | 140 | 2.18 | 3.31 |
| 229.27 | 0.707 | 2.86 | -- | -- | -- | -- | -- | -0.148 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 196.28 | humidity | 80 | 90 | < th | dose independent | rect. | 2 | 4 |
| 2 | 198.22 | humidity | 80 | 90 | < th | dose dependent | rect. | 2 | 4 |
| 3 | 198.94 | humidity | 90 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 6 | 200.27 | humidity | 80 | 90 | < th | dose independent | rect. | 2 | 1 |
| 10 | 200.29 | humidity | 90 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 11 | 200.30 | humidity | 90 | 10 | < th | dose independent | rect. | 3 | 1 |
| 48 | 204.88 | wind | 7 | 30 | > th | dose independent | rect. | 17 | 1 |
| 50 | 205.05 | wind | 7 | 30 | > th | dose independent | rect. | 17 | 3 |
| 54 | 207.04 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 17 | 1 |
| 57 | 207.87 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 64 | 208.70 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 16 | 3 |
| 65 | 208.73 | wind | 7 | 30 | > th | dose independent | rect. | 17 | 15 |
| 75 | 208.85 | wind | 7 | 30 | > th | dose dependent | rect. | 17 | 1 |
| 94 | 210.29 | temperature | 25 | 10 | < th | dose dependent | rect. | 2 | 19 |
| 112 | 211.01 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 18 | 1 |
| 128 | 211.69 | temperature | 25 | 270 | < th | dose dependent | rect. | 16 | 1 |
| 148 | 212.25 | temperature | 20 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 171 | 212.55 | temperature | 25 | 90 | < th | dose dependent | rect. | 16 | 3 |
| 206 | 213.04 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 3 |
| 218 | 213.26 | radiation | 10 | 10 | < th | dose independent | rect. | 11 | 2 |
| 222 | 213.33 | radiation | 10 | 10 | < th | dose dependent | rect. | 12 | 1 |
| 273 | 213.89 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 14 |
| 281 | 214.03 | humidity | 80 | 10 | < th | dose independent | rect. | 5 | 1 |
| 286 | 214.03 | humidity | 80 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 312 | 214.32 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 12 | 8 |
| 330 | 214.44 | wind | 5 | 30 | > th | dose dependent | rect. | 17 | 15 |
| 353 | 214.58 | temperature | 20 | 10 | < th | dose dependent | rect. | 3 | 8 |
| 357 | 214.61 | temperature | 20 | 90 | < th | dose independent | rect. | 3 | 1 |
| 369 | 214.73 | temperature | 25 | 270 | < th | dose independent | rect. | 16 | 1 |
| 381 | 214.87 | humidity | 50 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 386 | 214.89 | humidity | 80 | 10 | < th | dose dependent | rect. | 20 | 1 |
| 390 | 214.95 | humidity | 60 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 403 | 215.05 | wind | 7 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 431 | 215.24 | wind | 9 | 14400 | > th | dose dependent | rect. | 19 | 13 |
| 434 | 215.25 | wind | 9 | 14400 | > th | dose independent | rect. | 19 | 15 |
| 438 | 215.28 | wind | 7 | 14400 | > th | dose dependent | rect. | 17 | 4 |
| 443 | 215.31 | wind | 7 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 453 | 215.37 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 3 |
| 457 | 215.38 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 464 | 215.42 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 481 | 215.50 | wind | 7 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 485 | 215.50 | atmosphere | 1010 | 30 | < th | dose dependent | rect. | 13 | 8 |
| 502 | 215.60 | wind | 7 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 510 | 215.62 | wind | 9 | 14400 | < th | dose independent | rect. | 19 | 15 |
| 513 | 215.62 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 18 |
| 516 | 215.64 | wind | 9 | 14400 | < th | dose independent | rect. | 19 | 11 |
| 550 | 215.72 | wind | 5 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 553 | 215.72 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 13 |
| 555 | 215.73 | wind | 9 | 14400 | > th | dose independent | sin | 11 | NA |
| 561 | 215.74 | wind | 9 | 14400 | > th | dose dependent | sin | 10 | NA |
| 563 | 215.75 | wind | 7 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 571 | 215.77 | wind | 7 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 575 | 215.77 | wind | 7 | 14400 | < th | dose independent | rect. | 16 | 18 |
| 582 | 215.78 | humidity | 50 | 43200 | > th | dose independent | rect. | 22 | 8 |
| 592 | 215.79 | wind | 7 | 14400 | > th | dose independent | sin | 13 | NA |
| 637 | 215.86 | temperature | 10 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 652 | 215.89 | humidity | 50 | 43200 | > th | dose independent | rect. | 24 | 6 |
| 662 | 215.90 | wind | 9 | 14400 | > th | dose dependent | rect. | 19 | 7 |
| 664 | 215.91 | wind | 7 | 14400 | < th | dose independent | sin | 13 | NA |
| 691 | 215.94 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 2 |
| 700 | 215.95 | wind | 3 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 701 | 215.95 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 4 |
| 706 | 215.96 | wind | 9 | 14400 | < th | dose independent | sin | 11 | NA |
| 728 | 215.99 | wind | 3 | 10 | > th | dose independent | rect. | 3 | 4 |
| 736 | 215.99 | radiation | 1 | 1440 | < th | dose dependent | rect. | 23 | 8 |
| 768 | 216.04 | wind | 9 | 14400 | > th | dose independent | rect. | 17 | 8 |
| 896 | 216.17 | wind | 3 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 941 | 216.21 | wind | 5 | 14400 | > th | dose independent | rect. | 1 | 20 |
| 954 | 216.22 | wind | 5 | 14400 | > th | dose independent | rect. | 3 | 18 |
| 980 | 216.24 | wind | 5 | 14400 | < th | dose independent | rect. | 3 | 18 |