BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0449400 Os10g0449400|Os10g0449400
         (205 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0449400                                                      151   4e-37
Os12g0632200                                                      107   4e-24

>Os10g0449400 
          Length = 205

 Score =  151 bits (381), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 87/156 (55%), Positives = 87/156 (55%)

Query: 50  DHLRGGPAAVDLICAGELGXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLPMEEASXXXX 109
           DHLRGGPAAVDLICAGELG                            LLLPMEEAS    
Sbjct: 50  DHLRGGPAAVDLICAGELGSRRCRCCPRRGRRRAAPPPPGSAEEGRSLLLPMEEASSLEL 109

Query: 110 XXXXXXXXXXXXXXXXXXXXXXXXTVLAGSGYARVRLHGRPRQQLCPLPDLPASVLAGGG 169
                                   TVLAGSGYARVRLHGRPRQQLCPLPDLPASVLAGGG
Sbjct: 110 RRPAAPPPRPPREASSSAAAASLATVLAGSGYARVRLHGRPRQQLCPLPDLPASVLAGGG 169

Query: 170 YXXXXXXXXXXXXXCPSATVLVGGGKDRWLYVDWFS 205
           Y             CPSATVLVGGGKDRWLYVDWFS
Sbjct: 170 YARARLRDLPRRRPCPSATVLVGGGKDRWLYVDWFS 205



>Os12g0632200 
          Length = 129

 Score =  107 bits (268), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 54/68 (79%), Positives = 54/68 (79%)

Query: 138 GSGYARVRLHGRPRQQLCPLPDLPASVLAGGGYXXXXXXXXXXXXXCPSATVLVGGGKDR 197
           GSGYARVRLHG PRQQLCPLPDLPASVLAGGGY             CPSATVLVGGGKDR
Sbjct: 62  GSGYARVRLHGCPRQQLCPLPDLPASVLAGGGYAHARLRDLPRRLPCPSATVLVGGGKDR 121

Query: 198 WLYVDWFS 205
           WLYVDWFS
Sbjct: 122 WLYVDWFS 129



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.140    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,078,059
Number of extensions: 117699
Number of successful extensions: 179
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 2
Length of query: 205
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 109
Effective length of database: 12,023,257
Effective search space: 1310535013
Effective search space used: 1310535013
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)