BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0447400 Os10g0447400|AK066983
(239 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0447400 Conserved hypothetical protein 188 3e-48
Os01g0843850 Hypothetical protein 96 2e-20
>Os10g0447400 Conserved hypothetical protein
Length = 239
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 105/165 (63%), Positives = 105/165 (63%)
Query: 75 LLHPPLPRAHTHPPATPLTARTKDLRPWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 134
LLHPPLPRAHTHPPATPLTARTKDLRPW
Sbjct: 75 LLHPPLPRAHTHPPATPLTARTKDLRPWTTTAATSSLSPSRSPSAPSSSPAARLPAARLL 134
Query: 135 XXXXXXXXVGGGEGDRAGVEVVADVDVLLREVPEDGHRLLLRYRHDRQAQRPFLXXXXXX 194
VGGGEGDRAGVEVVADVDVLLREVPEDGHRLLLRYRHDRQAQRPFL
Sbjct: 135 RRPAAPRAVGGGEGDRAGVEVVADVDVLLREVPEDGHRLLLRYRHDRQAQRPFLHHHERV 194
Query: 195 XXXXXXXXXXXXXXTPASSPDSPVRFTSCWLYTRGHSRSVTHTLF 239
TPASSPDSPVRFTSCWLYTRGHSRSVTHTLF
Sbjct: 195 LRHQRQRQVRRQVRTPASSPDSPVRFTSCWLYTRGHSRSVTHTLF 239
>Os01g0843850 Hypothetical protein
Length = 92
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/92 (58%), Positives = 57/92 (61%), Gaps = 6/92 (6%)
Query: 148 GDRAGVEVVADVDVLLREVPEDGHRLLLRYRHDRQAQRPFLXXXXXXXXXXXXXXXXXXX 207
G A ++V +VPEDGHRLLLR RHDRQAQRP L
Sbjct: 7 GGPAAARATSEVGPSATKVPEDGHRLLLRCRHDRQAQRPLLHRHERVLLLQRHRR----- 61
Query: 208 XTPASSPDSPVRFTSCWLYTRGHSRSVTHTLF 239
TPASSPDSPVRF SCWLYTRGHSRSVTHTLF
Sbjct: 62 -TPASSPDSPVRFASCWLYTRGHSRSVTHTLF 92
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,947,244
Number of extensions: 139772
Number of successful extensions: 747
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 745
Number of HSP's successfully gapped: 4
Length of query: 239
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 141
Effective length of database: 11,918,829
Effective search space: 1680554889
Effective search space used: 1680554889
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)