BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0446200 Os10g0446200|AK121939
         (859 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0446200  Conserved hypothetical protein                     1654   0.0  

>Os10g0446200 Conserved hypothetical protein
          Length = 859

 Score = 1654 bits (4283), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 802/831 (96%), Positives = 802/831 (96%)

Query: 29  GCGAQPVVVGSYGQPRLWLKPYDWSYLRVELPPSFSSVTMDFATDRDIQREHLKDLPRRD 88
           GCGAQPVVVGSYGQPRLWLKPYDWSYLRVELPPSFSSVTMDFATDRDIQREHLKDLPRRD
Sbjct: 29  GCGAQPVVVGSYGQPRLWLKPYDWSYLRVELPPSFSSVTMDFATDRDIQREHLKDLPRRD 88

Query: 89  LAIICLMNSNPPIPDISDSFLDTLLSNFLVVGSFGSTNNQSDLAQCIPFQKNTTIVLRND 148
           LAIICLMNSNPPIPDISDSFLDTLLSNFLVVGSFGSTNNQSDLAQCIPFQKNTTIVLRND
Sbjct: 89  LAIICLMNSNPPIPDISDSFLDTLLSNFLVVGSFGSTNNQSDLAQCIPFQKNTTIVLRND 148

Query: 149 QISPGIWYIGYFNGLGPARTQSKMISRGRARSVSTSITVEGCPTSALWGPYCNQTIEMIS 208
           QISPGIWYIGYFNGLGPARTQSKMISRGRARSVSTSITVEGCPTSALWGPYCNQTIEMIS
Sbjct: 149 QISPGIWYIGYFNGLGPARTQSKMISRGRARSVSTSITVEGCPTSALWGPYCNQTIEMIS 208

Query: 209 CSQSSGYNNSRNLMGLNIDKRKTLNTREHTRRINFLSQWNHLEEKGVGSNSTTYSRMDNS 268
           CSQSSGYNNSRNLMGLNIDKRKTLNTREHTRRINFLSQWNHLEEKGVGSNSTTYSRMDNS
Sbjct: 209 CSQSSGYNNSRNLMGLNIDKRKTLNTREHTRRINFLSQWNHLEEKGVGSNSTTYSRMDNS 268

Query: 269 ITCAISNGSLCLRQGDMKFYFLDVVDLALQFEITATNFGLAQRSSLICYLRYNAFPRRDL 328
           ITCAISNGSLCLRQGDMKFYFLDVVDLALQFEITATNFGLAQRSSLICYLRYNAFPRRDL
Sbjct: 269 ITCAISNGSLCLRQGDMKFYFLDVVDLALQFEITATNFGLAQRSSLICYLRYNAFPRRDL 328

Query: 329 HDYSGDISSAPLVLKLPNIGRWYIAIETVNITQMNSTASTPLLDTTCFSLEWQVTGCLNG 388
           HDYSGDISSAPLVLKLPNIGRWYIAIETVNITQMNSTASTPLLDTTCFSLEWQVTGCLNG
Sbjct: 329 HDYSGDISSAPLVLKLPNIGRWYIAIETVNITQMNSTASTPLLDTTCFSLEWQVTGCLNG 388

Query: 389 KAGTNCSWEAYVLQRVPKRSPSVPFESYYVPSDGKASLEYSHFSLEQFLSNSSFEPFAWT 448
           KAGTNCSWEAYVLQRVPKRSPSVPFESYYVPSDGKASLEYSHFSLEQFLSNSSFEPFAWT
Sbjct: 389 KAGTNCSWEAYVLQRVPKRSPSVPFESYYVPSDGKASLEYSHFSLEQFLSNSSFEPFAWT 448

Query: 449 YFFLDIPEGSAGALIHVQIKSDKELNYELYSRYGGLPSNESWDYYASRTSSSNGSVYFSL 508
           YFFLDIPEGSAGALIHVQIKSDKELNYELYSRYGGLPSNESWDYYASRTSSSNGSVYFSL
Sbjct: 449 YFFLDIPEGSAGALIHVQIKSDKELNYELYSRYGGLPSNESWDYYASRTSSSNGSVYFSL 508

Query: 509 QNSTNSDMDLSIFYAKEGTWCFGVKHPSDKSNSQTYMSISLQGCHKNCNQKGACHSSIDE 568
           QNSTNSDMDLSIFYAKEGTWCFGVKHPSDKSNSQTYMSISLQGCHKNCNQKGACHSSIDE
Sbjct: 509 QNSTNSDMDLSIFYAKEGTWCFGVKHPSDKSNSQTYMSISLQGCHKNCNQKGACHSSIDE 568

Query: 569 SGLTFYSFCTCDRDHGGFDCNDELVSPNGHIWQSVFLIASNGAAILPAFWALRQKAFAEW 628
           SGLTFYSFCTCDRDHGGFDCNDELVSPNGHIWQSVFLIASNGAAILPAFWALRQKAFAEW
Sbjct: 569 SGLTFYSFCTCDRDHGGFDCNDELVSPNGHIWQSVFLIASNGAAILPAFWALRQKAFAEW 628

Query: 629 ILYTSSGISSALYHSCDVGTWCILSFRVLQFLDFWLSFMAVVGTFIYMATIDETSKRAMH 688
           ILYTSSGISSALYHSCDVGTWCILSFRVLQFLDFWLSFMAVVGTFIYMATIDETSKRAMH
Sbjct: 629 ILYTSSGISSALYHSCDVGTWCILSFRVLQFLDFWLSFMAVVGTFIYMATIDETSKRAMH 688

Query: 689 TAVFIXXXXXXXXXXXRSANXXXXXXXXXXXXXXXXXXEFSTARRFVCWPWRINLNVPQS 748
           TAVFI           RSAN                  EFSTARRFVCWPWRINLNVPQS
Sbjct: 689 TAVFILTALLAATGATRSANIGIVIAIGSLGLLIGWLLEFSTARRFVCWPWRINLNVPQS 748

Query: 749 WPNLRSLFSNSLDLLNKRFRWFYLLLGFITLAFAGTSWKLESNRSYWVWHSLWHITIYTS 808
           WPNLRSLFSNSLDLLNKRFRWFYLLLGFITLAFAGTSWKLESNRSYWVWHSLWHITIYTS
Sbjct: 749 WPNLRSLFSNSLDLLNKRFRWFYLLLGFITLAFAGTSWKLESNRSYWVWHSLWHITIYTS 808

Query: 809 SFFFLCSMRINTLTGPTLEEELNAIFFLTVCMHRPLQVGIYGFHDFWGVIP 859
           SFFFLCSMRINTLTGPTLEEELNAIFFLTVCMHRPLQVGIYGFHDFWGVIP
Sbjct: 809 SFFFLCSMRINTLTGPTLEEELNAIFFLTVCMHRPLQVGIYGFHDFWGVIP 859



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.135    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 27,678,443
Number of extensions: 1133048
Number of successful extensions: 2137
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2136
Number of HSP's successfully gapped: 1
Length of query: 859
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 750
Effective length of database: 11,344,475
Effective search space: 8508356250
Effective search space used: 8508356250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 160 (66.2 bits)