BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0400900 Os10g0400900|AK072620
         (725 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0400900  Colon cancer-associated Mic1-like domain conta...  1412   0.0  

>Os10g0400900 Colon cancer-associated Mic1-like domain containing protein
          Length = 725

 Score = 1412 bits (3655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 685/713 (96%), Positives = 685/713 (96%)

Query: 13  GNQMQGGLGSPGALSHAYVQHPPLRCDIPDIRGLFYDDANKFLIAPTADRILYWKIVPST 72
           GNQMQGGLGSPGALSHAYVQHPPLRCDIPDIRGLFYDDANKFLIAPTADRILYWKIVPST
Sbjct: 13  GNQMQGGLGSPGALSHAYVQHPPLRCDIPDIRGLFYDDANKFLIAPTADRILYWKIVPST 72

Query: 73  PAGPPNSDPVNDGPVLSVRYSLDLKAIGIQRSNHEVEFINRETGQTCNKKCRADSETILG 132
           PAGPPNSDPVNDGPVLSVRYSLDLKAIGIQRSNHEVEFINRETGQTCNKKCRADSETILG
Sbjct: 73  PAGPPNSDPVNDGPVLSVRYSLDLKAIGIQRSNHEVEFINRETGQTCNKKCRADSETILG 132

Query: 133 FFWTDCPTCDVIIIKTSGLDLFAYEPQSNALHLVDSKKINVSWYFYTHESRLILLASGMQ 192
           FFWTDCPTCDVIIIKTSGLDLFAYEPQSNALHLVDSKKINVSWYFYTHESRLILLASGMQ
Sbjct: 133 FFWTDCPTCDVIIIKTSGLDLFAYEPQSNALHLVDSKKINVSWYFYTHESRLILLASGMQ 192

Query: 193 CTLFTGYQFSAGGIVKLPKFEMTMTKSEANNKPVLAADDVHTVTVYGRIYCLQLDRVSMT 252
           CTLFTGYQFSAGGIVKLPKFEMTMTKSEANNKPVLAADDVHTVTVYGRIYCLQLDRVSMT
Sbjct: 193 CTLFTGYQFSAGGIVKLPKFEMTMTKSEANNKPVLAADDVHTVTVYGRIYCLQLDRVSMT 252

Query: 253 LNLYRFYRDAVVQQGTLPTYSSRIAVSAVDNIIMVHQIDAKVVILYDVFMDSYAPISAPL 312
           LNLYRFYRDAVVQQGTLPTYSSRIAVSAVDNIIMVHQIDAKVVILYDVFMDSYAPISAPL
Sbjct: 253 LNLYRFYRDAVVQQGTLPTYSSRIAVSAVDNIIMVHQIDAKVVILYDVFMDSYAPISAPL 312

Query: 313 PLLVRGLPSNNKXXXXXXXXXXXXYGGTLYGEGWSFLIPDLVCDVENGLLWKLHLDLEAI 372
           PLLVRGLPSNNK            YGGTLYGEGWSFLIPDLVCDVENGLLWKLHLDLEAI
Sbjct: 313 PLLVRGLPSNNKQSAQPPDSQSSAYGGTLYGEGWSFLIPDLVCDVENGLLWKLHLDLEAI 372

Query: 373 AASTSDAPLILEFLQRRKSDPSMVKTLSLAIVRTIILERRPITMVAKAMDVVLDSYSRLM 432
           AASTSDAPLILEFLQRRKSDPSMVKTLSLAIVRTIILERRPITMVAKAMDVVLDSYSRLM
Sbjct: 373 AASTSDAPLILEFLQRRKSDPSMVKTLSLAIVRTIILERRPITMVAKAMDVVLDSYSRLM 432

Query: 433 KMGGGLPAVRRTSEQNQQPGVQPGVNPDSASGDGNRPVQSNSEVEHGIANLAEHVDRTLL 492
           KMGGGLPAVRRTSEQNQQPGVQPGVNPDSASGDGNRPVQSNSEVEHGIANLAEHVDRTLL
Sbjct: 433 KMGGGLPAVRRTSEQNQQPGVQPGVNPDSASGDGNRPVQSNSEVEHGIANLAEHVDRTLL 492

Query: 493 NTXXXXXXXXXXXXXXXXPDRKPQVLGQDSRPLASGTSTQHGSHVASVAVSPSEMFESVF 552
           NT                PDRKPQVLGQDSRPLASGTSTQHGSHVASVAVSPSEMFESVF
Sbjct: 493 NTSSDSDDIIDASGASDAPDRKPQVLGQDSRPLASGTSTQHGSHVASVAVSPSEMFESVF 552

Query: 553 VLVEDEMMADPAYLISIIMEFLRSVSRAGLKAPPNLFVMMTTLLARSNRYPEIALFVSNK 612
           VLVEDEMMADPAYLISIIMEFLRSVSRAGLKAPPNLFVMMTTLLARSNRYPEIALFVSNK
Sbjct: 553 VLVEDEMMADPAYLISIIMEFLRSVSRAGLKAPPNLFVMMTTLLARSNRYPEIALFVSNK 612

Query: 613 ILEPSKELAMQLMELGQQHSPTRKLGVDMLRERGLHHDYVTALLQDGYHLEALRYARKYK 672
           ILEPSKELAMQLMELGQQHSPTRKLGVDMLRERGLHHDYVTALLQDGYHLEALRYARKYK
Sbjct: 613 ILEPSKELAMQLMELGQQHSPTRKLGVDMLRERGLHHDYVTALLQDGYHLEALRYARKYK 672

Query: 673 VITVQPVLFLEKAVAINSAQNLAAMLSFFSEFTPTFKTTSDYGRYRHILSEMI 725
           VITVQPVLFLEKAVAINSAQNLAAMLSFFSEFTPTFKTTSDYGRYRHILSEMI
Sbjct: 673 VITVQPVLFLEKAVAINSAQNLAAMLSFFSEFTPTFKTTSDYGRYRHILSEMI 725



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,085,791
Number of extensions: 942619
Number of successful extensions: 2106
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2105
Number of HSP's successfully gapped: 1
Length of query: 725
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 617
Effective length of database: 11,396,689
Effective search space: 7031757113
Effective search space used: 7031757113
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)