BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0381800 Os10g0381800|AK100608
(148 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0381800 Conserved hypothetical protein 237 3e-63
Os06g0476600 84 3e-17
Os11g0295666 79 1e-15
Os10g0315900 73 1e-13
Os06g0494600 64 4e-11
>Os10g0381800 Conserved hypothetical protein
Length = 148
Score = 237 bits (604), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 120/148 (81%), Positives = 120/148 (81%)
Query: 1 SAAKGKEMLPDSVACRDDIVARNNGAGTSAEVISQEXXXXXXXXERTVGPEENVSLGARG 60
SAAKGKEMLPDSVACRDDIVARNNGAGTSAEVISQE ERTVGPEENVSLGARG
Sbjct: 1 SAAKGKEMLPDSVACRDDIVARNNGAGTSAEVISQEPPPKPKTKERTVGPEENVSLGARG 60
Query: 61 KKLCTRVCSWCGLRDGHYTTTCPKNPANFEKVRKAMXXXXXXXXXXXXXXXXXXXXMACV 120
KKLCTRVCSWCGLRDGHYTTTCPKNPANFEKVRKAM MACV
Sbjct: 61 KKLCTRVCSWCGLRDGHYTTTCPKNPANFEKVRKAMSRGRGRRGRPRGSGRGGGRGMACV 120
Query: 121 GRSLMDELEREGITEQDSNDDMVESDAE 148
GRSLMDELEREGITEQDSNDDMVESDAE
Sbjct: 121 GRSLMDELEREGITEQDSNDDMVESDAE 148
>Os06g0476600
Length = 494
Score = 84.3 bits (207), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 33/45 (73%), Positives = 38/45 (84%)
Query: 50 PEENVSLGARGKKLCTRVCSWCGLRDGHYTTTCPKNPANFEKVRK 94
P+E V+LGA+GKKLCTR C WC LRDGHY TCPKNP NF+K+RK
Sbjct: 361 PDEEVTLGAKGKKLCTRECGWCHLRDGHYANTCPKNPVNFDKIRK 405
>Os11g0295666
Length = 360
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 37/50 (74%)
Query: 46 RTVGPEENVSLGARGKKLCTRVCSWCGLRDGHYTTTCPKNPANFEKVRKA 95
RT P+E V +GA+GKK+CTR C WC LRDGHY TCP NP NF KV KA
Sbjct: 227 RTRDPDEEVQIGAKGKKMCTRECGWCHLRDGHYANTCPMNPTNFNKVMKA 276
>Os10g0315900
Length = 210
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 42/68 (61%)
Query: 28 TSAEVISQEXXXXXXXXERTVGPEENVSLGARGKKLCTRVCSWCGLRDGHYTTTCPKNPA 87
++ + IS+ R P E V LGA G K CTR CSWCGL+DGH +TCPKNP+
Sbjct: 122 SAGDEISRRPPPKSMTKGRGSDPNETVRLGAPGPKKCTRGCSWCGLKDGHNVSTCPKNPS 181
Query: 88 NFEKVRKA 95
NFE++ A
Sbjct: 182 NFERLAAA 189
>Os06g0494600
Length = 149
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 37/75 (49%)
Query: 55 SLGARGKKLCTRVCSWCGLRDGHYTTTCPKNPANFEKVRKAMXXXXXXXXXXXXXXXXXX 114
S GA G K CTR CSWCGL+DGHY CPKN ANF++ A
Sbjct: 47 SAGAPGPKKCTRGCSWCGLKDGHYRNNCPKNLANFKRTAAANKRGKAKSGWPRGESCGGG 106
Query: 115 XXMACVGRSLMDELE 129
V R+LMDE E
Sbjct: 107 RGRKAVRRTLMDEWE 121
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.128 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,177,872
Number of extensions: 119773
Number of successful extensions: 359
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 5
Length of query: 148
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 56
Effective length of database: 12,232,113
Effective search space: 684998328
Effective search space used: 684998328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 151 (62.8 bits)