BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0378000 Os10g0378000|Os10g0378000
         (218 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0378000                                                      423   e-119
Os11g0577100                                                      153   9e-38
Os02g0445500                                                      100   5e-22
Os11g0155800                                                       77   7e-15

>Os10g0378000 
          Length = 218

 Score =  423 bits (1088), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/218 (94%), Positives = 206/218 (94%)

Query: 1   MSYPYPLCTPPSPLQLYIIANFLKCDAMSSKSCDDPHAAEYIGLGLPKSWLAAWDSISAA 60
           MSYPYPLCTPPSPLQLYIIANFLKCDAMSSKSCDDPHAAEYIGLGLPKSWLAAWDSISAA
Sbjct: 1   MSYPYPLCTPPSPLQLYIIANFLKCDAMSSKSCDDPHAAEYIGLGLPKSWLAAWDSISAA 60

Query: 61  KAKNVESVXXXXXXXXXXXXRKNDCSPNDVEKEFDDNNLDNVWSDEDSSDNDCTNLDEID 120
           KAKNVESV            RKNDCSPNDVEKEFDDNNLDNVWSDEDSSDNDCTNLDEID
Sbjct: 61  KAKNVESVETTPAKTEATEERKNDCSPNDVEKEFDDNNLDNVWSDEDSSDNDCTNLDEID 120

Query: 121 FLLKQVQSSMKKSRQKKGNLEIFKDLIREHKFDFLGILETIKHDFSAEMLQKLSVGRGMV 180
           FLLKQVQSSMKKSRQKKGNLEIFKDLIREHKFDFLGILETIKHDFSAEMLQKLSVGRGMV
Sbjct: 121 FLLKQVQSSMKKSRQKKGNLEIFKDLIREHKFDFLGILETIKHDFSAEMLQKLSVGRGMV 180

Query: 181 WKWMPATGRSGGILVGIDSEKLNIIGEKFGIPVIMVAT 218
           WKWMPATGRSGGILVGIDSEKLNIIGEKFGIPVIMVAT
Sbjct: 181 WKWMPATGRSGGILVGIDSEKLNIIGEKFGIPVIMVAT 218



>Os11g0577100 
          Length = 1015

 Score =  153 bits (386), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 78/133 (58%), Positives = 95/133 (71%), Gaps = 13/133 (9%)

Query: 91  EKEFDDNNLDNVWSDEDSSDNDCTNLDEIDFLLKQVQSSMKKSRQKKGNLEIFK------ 144
           +KE +    D  WSD+DSS+ND + LDEI+ +LKQVQSSMKKS Q++GNLEIFK      
Sbjct: 336 KKEMEGMFTDQEWSDDDSSENDNSTLDEIEHMLKQVQSSMKKSNQRRGNLEIFKVTPKNS 395

Query: 145 -------DLIREHKFDFLGILETIKHDFSAEMLQKLSVGRGMVWKWMPATGRSGGILVGI 197
                  DLIREHK DF+ ILET+K DFS EML KLS GR M W W+ A GRSGGILVG+
Sbjct: 396 KKKGHLQDLIREHKLDFVAILETVKQDFSTEMLNKLSSGRNMHWSWVAAHGRSGGILVGM 455

Query: 198 DSEKLNIIGEKFG 210
           D +K+N++ EK G
Sbjct: 456 DKDKVNVLNEKTG 468



>Os02g0445500 
          Length = 1759

 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 57/146 (39%), Positives = 82/146 (56%), Gaps = 35/146 (23%)

Query: 97  NNLDNVWSDEDSSDNDCTNLDEIDFLLKQVQSSMKKSRQKKGNLEIFK------------ 144
           + L  ++S ED  D++   LDEI+ L+K + +S  K ++ KGNL+  K            
Sbjct: 779 SGLGELYSLEDDVDSE---LDEIENLIKNIHTSSGKGKRMKGNLDTVKVREKGKIILRKM 835

Query: 145 --------------------DLIREHKFDFLGILETIKHDFSAEMLQKLSVGRGMVWKWM 184
                               DLI++H  DF+GI+ET+K +FSA ML  L  GR +VW+W+
Sbjct: 836 IGLFWNIRGMGSPEKIGHLQDLIKDHHLDFIGIIETVKQEFSATMLGSLGGGRNLVWRWI 895

Query: 185 PATGRSGGILVGIDSEKLNIIGEKFG 210
           PA GRSGGILVGIDS++ +I+   FG
Sbjct: 896 PANGRSGGILVGIDSDRHDILDTSFG 921



>Os11g0155800 
          Length = 841

 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 53/72 (73%), Gaps = 3/72 (4%)

Query: 135 QKKGNLEIFKDLIREHKFDFLGILETIKHDFSAEMLQKLSVGRGMVWKWMPATGRSGGIL 194
           +K G+L+   DLI+E   DF+GI+ETIK DFS  +L+ LS  + M W+W+PA G SGGIL
Sbjct: 368 EKTGHLQ---DLIKEKNIDFVGIMETIKQDFSVGLLRGLSGNKNMKWEWLPAMGHSGGIL 424

Query: 195 VGIDSEKLNIIG 206
           VGI+ +KL+++ 
Sbjct: 425 VGINIDKLSMLA 436



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.134    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,560,341
Number of extensions: 293491
Number of successful extensions: 1013
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1011
Number of HSP's successfully gapped: 4
Length of query: 218
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 121
Effective length of database: 11,971,043
Effective search space: 1448496203
Effective search space used: 1448496203
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)