Os10g0378000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os10g0378000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.02 | 0.407 | 13.3 | -0.718 | 0.32 | -2.23 | -1.59 | -3.26 | -0.065 | 21 | 0.2909 | 1387 | -- | -- |
| 79.62 | 0.416 | 13.4 | -0.718 | 0.329 | -1.38 | -1.34 | -- | -0.0835 | 20.1 | 1.609 | 1331 | -- | -- |
| 81.83 | 0.421 | 13.4 | -0.661 | 0.491 | -1.99 | -- | -2.76 | -0.0401 | 21.2 | 0.2957 | 1419 | -- | -- |
| 82.83 | 0.424 | 13.4 | -0.854 | 0.147 | -1.62 | -- | -- | -0.119 | 19.9 | 1.561 | 1310 | -- | -- |
| 85.87 | 0.432 | 13.3 | -0.86 | -- | -2.1 | -- | -1.61 | -0.023 | -- | 0.2233 | 1318 | -- | -- |
| 101.74 | 0.473 | 13.4 | -0.608 | 0.585 | -- | -0.955 | -- | 0.0539 | 21.6 | -- | -- | -- | -- |
| 105.08 | 0.48 | 13.4 | -0.574 | 0.587 | -- | -- | -- | 0.0543 | 21.9 | -- | -- | -- | -- |
| 82.55 | 0.423 | 13.4 | -0.905 | -- | -1.76 | -- | -- | -0.109 | -- | 0.62 | 1268 | -- | -- |
| 100.23 | 0.466 | 13.4 | -- | 0.0395 | -1.41 | -- | -- | -0.0701 | 6.39 | 2.314 | 1233 | -- | -- |
| 125.77 | 0.524 | 13.4 | -0.567 | -- | -- | -- | -- | 0.0544 | -- | -- | -- | -- | -- |
| 113.75 | 0.499 | 13.4 | -- | 0.586 | -- | -- | -- | 0.118 | 21.8 | -- | -- | -- | -- |
| 99.73 | 0.465 | 13.4 | -- | -- | -1.34 | -- | -- | 0.0131 | -- | 2.215 | 1232 | -- | -- |
| 134.25 | 0.541 | 13.3 | -- | -- | -- | -- | -- | 0.117 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.34 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 2 | 74.36 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 8 | 75.29 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 8 |
| 9 | 75.29 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 15 |
| 16 | 75.38 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 21 | 75.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 30 | 75.63 | radiation | 1 | 720 | > th | dose independent | sin | 14 | NA |
| 39 | 75.71 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 9 |
| 66 | 76.30 | temperature | 20 | 720 | > th | dose dependent | sin | 16 | NA |
| 67 | 76.31 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 14 |
| 69 | 76.32 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 15 |
| 80 | 76.53 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 84 | 76.55 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 99 | 76.77 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 120 | 76.96 | temperature | 25 | 720 | < th | dose independent | sin | 18 | NA |
| 126 | 77.00 | humidity | 60 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 128 | 77.01 | humidity | 60 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 139 | 77.12 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 144 | 77.14 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 146 | 77.14 | temperature | 20 | 90 | > th | dose dependent | sin | 10 | NA |
| 148 | 77.16 | radiation | 20 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 152 | 77.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 172 | 77.29 | radiation | 1 | 720 | < th | dose dependent | sin | 13 | NA |
| 180 | 77.33 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 13 |
| 191 | 77.41 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 192 | 77.41 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 200 | 77.44 | radiation | 30 | 14400 | < th | dose independent | rect. | 15 | 17 |
| 203 | 77.46 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 224 | 77.57 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 227 | 77.58 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 256 | 77.64 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 262 | 77.65 | temperature | 30 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 267 | 77.66 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 270 | 77.67 | temperature | 10 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 274 | 77.68 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 276 | 77.68 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 279 | 77.69 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 282 | 77.70 | humidity | 90 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 290 | 77.72 | humidity | 90 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 292 | 77.72 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 294 | 77.73 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 297 | 77.74 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 319 | 77.78 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 11 | 8 |
| 332 | 77.80 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 342 | 77.82 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 15 |
| 348 | 77.83 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 352 | 77.84 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 420 | 77.92 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 449 | 77.95 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 462 | 77.96 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 491 | 77.99 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 539 | 78.04 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 545 | 78.04 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 15 |
| 598 | 78.10 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 617 | 78.12 | atmosphere | 1005 | 43200 | > th | dose dependent | sin | 7 | NA |
| 640 | 78.13 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 19 | 15 |
| 680 | 78.15 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 17 |
| 695 | 78.17 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 6 |
| 697 | 78.17 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 12 |
| 698 | 78.17 | temperature | 30 | 720 | < th | dose dependent | sin | 17 | NA |
| 700 | 78.17 | radiation | 1 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 722 | 78.17 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 746 | 78.19 | radiation | 30 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 765 | 78.20 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 766 | 78.20 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 783 | 78.20 | radiation | 40 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 899 | 78.25 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 2 | 18 |
| 935 | 78.27 | humidity | 90 | 43200 | < th | dose independent | sin | 20 | NA |
| 961 | 78.28 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 5 |