BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0377800 Os10g0377800|AK066800
(548 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0377800 Similar to Pyridoxamine 5-phosphate oxidase 1015 0.0
>Os10g0377800 Similar to Pyridoxamine 5-phosphate oxidase
Length = 548
Score = 1015 bits (2624), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/548 (91%), Positives = 499/548 (91%)
Query: 1 MLTVAASALRNNKKSTAAACFSLAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
MLTVAASALRNNKKSTAAACFSLAM
Sbjct: 1 MLTVAASALRNNKKSTAAACFSLAMPFLLSSPTPPPPPHSSSLPRSPSPRPRLPLPPPRR 60
Query: 61 AALVTAAQDPRWRRXXXXXXXXXXXXXXGEEVTHLAQREAAEIDEQLMGPLGFSVDQLME 120
AALVTAAQDPRWRR GEEVTHLAQREAAEIDEQLMGPLGFSVDQLME
Sbjct: 61 AALVTAAQDPRWRRAMASLAVSASASASGEEVTHLAQREAAEIDEQLMGPLGFSVDQLME 120
Query: 121 LAGLSVAAAVAEVYKLGEHTRVLVICGPGNNGGDGLVAARHLHHFGYKPSVCYPKRTPKP 180
LAGLSVAAAVAEVYKLGEHTRVLVICGPGNNGGDGLVAARHLHHFGYKPSVCYPKRTPKP
Sbjct: 121 LAGLSVAAAVAEVYKLGEHTRVLVICGPGNNGGDGLVAARHLHHFGYKPSVCYPKRTPKP 180
Query: 181 LYSGLCTQLESLTIPFVPVEDLPANLSEEFDIIIDAMFGFSFHGTPRPPFDDLINRLVSL 240
LYSGLCTQLESLTIPFVPVEDLPANLSEEFDIIIDAMFGFSFHGTPRPPFDDLINRLVSL
Sbjct: 181 LYSGLCTQLESLTIPFVPVEDLPANLSEEFDIIIDAMFGFSFHGTPRPPFDDLINRLVSL 240
Query: 241 SAIDNSAKRPAIVSVDIPSGWHVEEGDINGGGFKPDMLVSLTAPKLCAKKFTGPHHFLGG 300
SAIDNSAKRPAIVSVDIPSGWHVEEGDINGGGFKPDMLVSLTAPKLCAKKFTGPHHFLGG
Sbjct: 241 SAIDNSAKRPAIVSVDIPSGWHVEEGDINGGGFKPDMLVSLTAPKLCAKKFTGPHHFLGG 300
Query: 301 RFVPPPIVSKYKLHLPPYPGTSMCVRIGKAPSVDISSLRENYISPELLENQVMPDPFDQF 360
RFVPPPIVSKYKLHLPPYPGTSMCVRIGKAPSVDISSLRENYISPELLENQVMPDPFDQF
Sbjct: 301 RFVPPPIVSKYKLHLPPYPGTSMCVRIGKAPSVDISSLRENYISPELLENQVMPDPFDQF 360
Query: 361 VRWFDEAVTAGLREPNAMALTTADKEGKPSSRMVLLKGVDKQGFVWYTNYGSQKAHDLSE 420
VRWFDEAVTAGLREPNAMALTTADKEGKPSSRMVLLKGVDKQGFVWYTNYGSQKAHDLSE
Sbjct: 361 VRWFDEAVTAGLREPNAMALTTADKEGKPSSRMVLLKGVDKQGFVWYTNYGSQKAHDLSE 420
Query: 421 NPNAALLFYWNEMNRQVRVEGSVQKVPEEESEKYFHSRPRGSQLGAIVSKQSTIIPGREV 480
NPNAALLFYWNEMNRQVRVEGSVQKVPEEESEKYFHSRPRGSQLGAIVSKQSTIIPGREV
Sbjct: 421 NPNAALLFYWNEMNRQVRVEGSVQKVPEEESEKYFHSRPRGSQLGAIVSKQSTIIPGREV 480
Query: 481 LQQAYKELEQKYSDGSVIPKPDYWGGYRLTPKLFEFWQGQQSRLHDRLQYSLREVDRSTV 540
LQQAYKELEQKYSDGSVIPKPDYWGGYRLTPKLFEFWQGQQSRLHDRLQYSLREVDRSTV
Sbjct: 481 LQQAYKELEQKYSDGSVIPKPDYWGGYRLTPKLFEFWQGQQSRLHDRLQYSLREVDRSTV 540
Query: 541 WHIERLSP 548
WHIERLSP
Sbjct: 541 WHIERLSP 548
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,204,484
Number of extensions: 895011
Number of successful extensions: 1782
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1781
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 442
Effective length of database: 11,501,117
Effective search space: 5083493714
Effective search space used: 5083493714
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)