Os10g0377800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Pyridoxamine 5-phosphate oxidase.
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Os10g0377800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Pyridoxamine 5-phosphate oxidase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.58 | 0.35 | 11.5 | -0.968 | 1.01 | 0.484 | 0.357 | 0.0664 | -0.266 | 16.8 | 20.4 | 929 | -- | -- |
| 55.58 | 0.347 | 11.6 | -0.979 | 1.01 | 0.473 | 0.349 | -- | -0.27 | 16.8 | 20.5 | 926 | -- | -- |
| 55.91 | 0.348 | 11.5 | -0.967 | 1.01 | 0.49 | -- | 0.064 | -0.265 | 16.8 | 20.5 | 926 | -- | -- |
| 55.89 | 0.348 | 11.6 | -0.981 | 1.01 | 0.477 | -- | -- | -0.272 | 16.8 | 20.7 | 948 | -- | -- |
| 102.47 | 0.471 | 11.5 | -0.954 | -- | 0.678 | -- | 0.462 | -0.286 | -- | 20.18 | 333 | -- | -- |
| 61.61 | 0.368 | 11.5 | -0.793 | 1 | -- | 0.449 | -- | -0.164 | 17 | -- | -- | -- | -- |
| 62.12 | 0.369 | 11.5 | -0.792 | 1 | -- | -- | -- | -0.162 | 17 | -- | -- | -- | -- |
| 81.08 | 0.419 | 11.5 | -0.966 | -- | 0.652 | -- | -- | -0.294 | -- | 26.6 | 282 | -- | -- |
| 77.65 | 0.41 | 11.5 | -- | 1.02 | 0.153 | -- | -- | -0.122 | 16.9 | 22.31 | 976 | -- | -- |
| 115.06 | 0.501 | 11.5 | -0.828 | -- | -- | -- | -- | -0.187 | -- | -- | -- | -- | -- |
| 78.65 | 0.415 | 11.5 | -- | 1.02 | -- | -- | -- | -0.0734 | 17 | -- | -- | -- | -- |
| 106.47 | 0.481 | 11.5 | -- | -- | 0.608 | -- | -- | -0.225 | -- | 26.58 | 282 | -- | -- |
| 133.16 | 0.539 | 11.5 | -- | -- | -- | -- | -- | -0.0953 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.38 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 10 |
| 4 | 52.77 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 16 |
| 5 | 52.88 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 9 | 52.99 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 13 | 53.11 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 4 | 9 |
| 14 | 53.17 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 21 | 16 |
| 15 | 53.20 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 23 | 14 |
| 21 | 53.24 | wind | 9.0 | 14400 | > th | dose independent | rect. | 22 | 15 |
| 23 | 53.27 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 32 | 53.36 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 19 |
| 42 | 53.43 | wind | 9.0 | 14400 | > th | dose independent | rect. | 3 | 10 |
| 50 | 53.51 | wind | 9.0 | 14400 | > th | dose independent | rect. | 5 | 7 |
| 51 | 53.52 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 65 | 53.69 | wind | 9.0 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 67 | 53.69 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 2 | 8 |
| 69 | 53.70 | wind | 3.0 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 96 | 53.82 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 103 | 53.85 | wind | 9.0 | 14400 | < th | dose independent | rect. | 3 | 10 |
| 109 | 53.90 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 18 |
| 110 | 53.90 | temperature | 20.0 | 10 | > th | dose independent | rect. | 8 | 21 |
| 119 | 53.94 | wind | 9.0 | 14400 | < th | dose independent | rect. | 22 | 15 |
| 123 | 53.96 | wind | 9.0 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 128 | 53.97 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 17 | 15 |
| 136 | 54.00 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 19 |
| 141 | 54.04 | temperature | 20.0 | 10 | > th | dose independent | rect. | 23 | 6 |
| 148 | 54.07 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 153 | 54.09 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 8 | 20 |
| 156 | 54.11 | wind | 3.0 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 160 | 54.11 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 17 |
| 167 | 54.16 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 23 | 5 |
| 175 | 54.20 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 176 | 54.20 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 17 | 15 |
| 181 | 54.22 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 21 | 7 |
| 183 | 54.24 | temperature | 25.0 | 270 | > th | dose independent | rect. | 24 | 13 |
| 185 | 54.25 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 5 |
| 192 | 54.28 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 3 |
| 207 | 54.31 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 9 | 4 |
| 212 | 54.33 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 220 | 54.35 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 221 | 54.35 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 17 |
| 225 | 54.37 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 239 | 54.39 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 18 |
| 245 | 54.40 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 19 | 13 |
| 264 | 54.46 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 280 | 54.49 | temperature | 25.0 | 270 | < th | dose independent | sin | 6 | NA |
| 285 | 54.50 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 2 |
| 286 | 54.50 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 287 | 54.50 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 300 | 54.54 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 315 | 54.59 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 344 | 54.62 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 370 | 54.66 | humidity | 90.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 392 | 54.68 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 400 | 54.69 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 405 | 54.70 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 9 |
| 421 | 54.73 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 433 | 54.75 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 447 | 54.78 | wind | 7.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 455 | 54.79 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 466 | 54.80 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 467 | 54.81 | wind | 9.0 | 14400 | > th | dose independent | sin | 6 | NA |
| 479 | 54.82 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 2 |
| 529 | 54.86 | wind | 3.0 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 539 | 54.87 | temperature | 20.0 | 10 | > th | dose independent | rect. | 21 | 8 |
| 541 | 54.87 | radiation | 1.0 | 10 | < th | dose independent | rect. | 23 | 15 |
| 543 | 54.87 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 8 |
| 549 | 54.88 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 6 |
| 551 | 54.88 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 564 | 54.90 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 581 | 54.91 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 16 |
| 587 | 54.93 | temperature | 25.0 | 270 | > th | dose independent | sin | 6 | NA |
| 636 | 54.98 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 23 | 1 |
| 641 | 54.99 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 645 | 55.00 | wind | 3.0 | 43200 | < th | dose independent | rect. | 23 | 5 |
| 658 | 55.01 | wind | 9.0 | 14400 | > th | dose dependent | sin | 6 | NA |
| 665 | 55.01 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 17 |
| 666 | 55.02 | wind | 9.0 | 14400 | < th | dose independent | sin | 6 | NA |
| 678 | 55.03 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 691 | 55.04 | wind | 9.0 | 10 | < th | dose independent | rect. | 8 | 21 |
| 711 | 55.07 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 720 | 55.08 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 733 | 55.08 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 741 | 55.08 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 19 | 8 |
| 749 | 55.09 | radiation | 1.0 | 10 | < th | dose independent | rect. | 23 | 13 |
| 758 | 55.10 | wind | 7.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 761 | 55.10 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 768 | 55.11 | wind | 3.0 | 43200 | > th | dose independent | rect. | 23 | 5 |
| 778 | 55.11 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 23 | 15 |
| 779 | 55.11 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 16 |
| 800 | 55.14 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 804 | 55.14 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 811 | 55.15 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 815 | 55.15 | radiation | 1.0 | 10 | < th | dose independent | rect. | 21 | 17 |
| 830 | 55.16 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 845 | 55.17 | temperature | 20.0 | 720 | > th | dose independent | rect. | 16 | 18 |
| 848 | 55.18 | temperature | 20.0 | 10 | > th | dose independent | rect. | 1 | 4 |
| 850 | 55.18 | radiation | 1.0 | 10 | < th | dose independent | rect. | 23 | 9 |
| 865 | 55.19 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 866 | 55.19 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 5 | 16 |
| 895 | 55.22 | radiation | 1.0 | 10 | < th | dose independent | rect. | 23 | 7 |
| 898 | 55.22 | temperature | 15.0 | 270 | > th | dose dependent | sin | 6 | NA |
| 907 | 55.23 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 912 | 55.23 | temperature | 20.0 | 720 | > th | dose independent | rect. | 14 | 20 |
| 914 | 55.23 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 23 | 5 |
| 918 | 55.23 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 13 | 15 |
| 920 | 55.23 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 21 | 19 |
| 924 | 55.24 | humidity | 90.0 | 30 | > th | dose independent | rect. | 22 | 6 |
| 934 | 55.24 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 23 | 6 |
| 938 | 55.25 | temperature | 20.0 | 720 | > th | dose independent | sin | 10 | NA |
| 951 | 55.25 | humidity | 50.0 | 10 | > th | dose independent | rect. | 8 | 21 |
| 952 | 55.26 | radiation | 1.0 | 10 | > th | dose independent | sin | 9 | NA |
| 954 | 55.26 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 23 | 2 |
| 970 | 55.27 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 971 | 55.27 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 972 | 55.27 | wind | 5.0 | 270 | < th | dose independent | rect. | 2 | 5 |