BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0346200 Os10g0346200|AK106542
         (360 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0346200  Zinc finger, RING-type domain containing protein    727   0.0  

>Os10g0346200 Zinc finger, RING-type domain containing protein
          Length = 360

 Score =  727 bits (1876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/360 (96%), Positives = 348/360 (96%)

Query: 1   MVVCKCRKATRVYCFVHKVPVCGECICFPEHQLCVVKNYAEWVVNPDYDWPQHCSSCNSV 60
           MVVCKCRKATRVYCFVHKVPVCGECICFPEHQLCVVKNYAEWVVNPDYDWPQHCSSCNSV
Sbjct: 1   MVVCKCRKATRVYCFVHKVPVCGECICFPEHQLCVVKNYAEWVVNPDYDWPQHCSSCNSV 60

Query: 61  LEAGSEETTRLGCLHVMHTRCLISHIQSYSTQTAPAGYVCPSCSTPIWPPSTIKDTGSRL 120
           LEAGSEETTRLGCLHVMHTRCLISHIQSYSTQTAPAGYVCPSCSTPIWPPSTIKDTGSRL
Sbjct: 61  LEAGSEETTRLGCLHVMHTRCLISHIQSYSTQTAPAGYVCPSCSTPIWPPSTIKDTGSRL 120

Query: 121 HSKLKEAIAQTGLEKNVFGNHFVTMPKADTRTPPAFASDPLKRVSISGDRESNGANIINS 180
           HSKLKEAIAQTGLEKNVFGNHFVTMPKADTRTPPAFASDPLKRVSISGDRESNGANIINS
Sbjct: 121 HSKLKEAIAQTGLEKNVFGNHFVTMPKADTRTPPAFASDPLKRVSISGDRESNGANIINS 180

Query: 181 AIDANVQSGGMYSSATVGSGTPSHVEPEIVEIDGPSPITTQFPEQESNFIRSPSPHGPSA 240
           AIDANVQSGGMYSSATVGSGTPSHVEPEIVEIDGPSPITTQFPEQESNFIRSPSPHGPSA
Sbjct: 181 AIDANVQSGGMYSSATVGSGTPSHVEPEIVEIDGPSPITTQFPEQESNFIRSPSPHGPSA 240

Query: 241 MTRKGANYVERQNSEISYYADDEDANRKKYTKRGTFRHKFLRMLLPFWSSALPTLPVTAP 300
           MTRKGANYVERQNSEISYYADDEDANRKKYTKRGTFRHKFLRMLLPFWSSALPTLPVTAP
Sbjct: 241 MTRKGANYVERQNSEISYYADDEDANRKKYTKRGTFRHKFLRMLLPFWSSALPTLPVTAP 300

Query: 301 PRKESDAPEGRSRHQKSSRMDPTKXXXXXXXXXXXXTMGILYYRLTQRSLSENFIEDEPQ 360
           PRKESDAPEGRSRHQKSSRMDPTK            TMGILYYRLTQRSLSENFIEDEPQ
Sbjct: 301 PRKESDAPEGRSRHQKSSRMDPTKILLALAIMACIATMGILYYRLTQRSLSENFIEDEPQ 360



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.131    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,584,762
Number of extensions: 609265
Number of successful extensions: 2112
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2112
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 258
Effective length of database: 11,709,973
Effective search space: 3021173034
Effective search space used: 3021173034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)