BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0212100 Os10g0212100|AK099670
         (104 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0212100  Conserved hypothetical protein                      222   5e-59
Os05g0505633                                                       66   5e-12

>Os10g0212100 Conserved hypothetical protein
          Length = 104

 Score =  222 bits (565), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MYGPMNADTIMFAEFSYSAHILHVTLNPIYCRGSDWRGTSKQFNKDDITTYNISCFLLPI 60
           MYGPMNADTIMFAEFSYSAHILHVTLNPIYCRGSDWRGTSKQFNKDDITTYNISCFLLPI
Sbjct: 1   MYGPMNADTIMFAEFSYSAHILHVTLNPIYCRGSDWRGTSKQFNKDDITTYNISCFLLPI 60

Query: 61  YDIQMLIKSVVWQELSSHHGVLQCQMADVQKRLRFSSRMRHSNR 104
           YDIQMLIKSVVWQELSSHHGVLQCQMADVQKRLRFSSRMRHSNR
Sbjct: 61  YDIQMLIKSVVWQELSSHHGVLQCQMADVQKRLRFSSRMRHSNR 104



>Os05g0505633 
          Length = 72

 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 37/66 (56%), Gaps = 26/66 (39%)

Query: 29 IYCRGSDWRGTSKQFNKDDITTYNISCFLLPIYDIQMLIKSVVWQELSSHHGVLQCQMAD 88
          I  RGSDWRGTSKQFNKDD                          ELSSHHGVLQCQMAD
Sbjct: 2  ISNRGSDWRGTSKQFNKDD--------------------------ELSSHHGVLQCQMAD 35

Query: 89 VQKRLR 94
          VQK LR
Sbjct: 36 VQKLLR 41



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.135    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,388,284
Number of extensions: 115529
Number of successful extensions: 256
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 2
Length of query: 104
Length of database: 17,035,801
Length adjustment: 72
Effective length of query: 32
Effective length of database: 13,276,393
Effective search space: 424844576
Effective search space used: 424844576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)