BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0198100 Os10g0198100|AK074024
         (236 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0198100  Conserved hypothetical protein                      483   e-137
Os05g0480800  Hypothetical protein                                 86   2e-17
Os05g0480900                                                       77   1e-14

>Os10g0198100 Conserved hypothetical protein
          Length = 236

 Score =  483 bits (1243), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 236/236 (100%), Positives = 236/236 (100%)

Query: 1   AVHVRGGAAGWFVCEISTISFTPAIRSQDAIGCGYNLTGIQRIKMNGALWIPILPPPVVD 60
           AVHVRGGAAGWFVCEISTISFTPAIRSQDAIGCGYNLTGIQRIKMNGALWIPILPPPVVD
Sbjct: 1   AVHVRGGAAGWFVCEISTISFTPAIRSQDAIGCGYNLTGIQRIKMNGALWIPILPPPVVD 60

Query: 61  ARYQGLCLQCGRRIKGRSNLCSISCRLLRVHTGARRGMAQNLVEFSESVGQPIHQLDQLC 120
           ARYQGLCLQCGRRIKGRSNLCSISCRLLRVHTGARRGMAQNLVEFSESVGQPIHQLDQLC
Sbjct: 61  ARYQGLCLQCGRRIKGRSNLCSISCRLLRVHTGARRGMAQNLVEFSESVGQPIHQLDQLC 120

Query: 121 GQCLRSFCGVSCPNHLVHPHPQGNHAAGPDIITIERLNGWLVIDQEQLPVEFGQDIHVMV 180
           GQCLRSFCGVSCPNHLVHPHPQGNHAAGPDIITIERLNGWLVIDQEQLPVEFGQDIHVMV
Sbjct: 121 GQCLRSFCGVSCPNHLVHPHPQGNHAAGPDIITIERLNGWLVIDQEQLPVEFGQDIHVMV 180

Query: 181 GEDGRHMLPIKRLPAEHGDGHDGLVEPDWNLCARAGCNEMFNGNAVCCCMRCFHLL 236
           GEDGRHMLPIKRLPAEHGDGHDGLVEPDWNLCARAGCNEMFNGNAVCCCMRCFHLL
Sbjct: 181 GEDGRHMLPIKRLPAEHGDGHDGLVEPDWNLCARAGCNEMFNGNAVCCCMRCFHLL 236



>Os05g0480800 Hypothetical protein
          Length = 280

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 101/217 (46%), Gaps = 9/217 (4%)

Query: 20  SFTPAIRSQDAIG-CGYNLTGIQRIKMNGALWIPILPPPVVDARYQG-LCLQCGRRI-KG 76
           S  PA  ++  +G  GYN   IQR+K     WI +L P +   + +G  C+ C ++I + 
Sbjct: 61  SGDPAAFAKYPVGRWGYNWNYIQRVKDWNRDWI-LLNPRMTPLQGRGRTCVNCNQKIGES 119

Query: 77  RSNLCSISCRLLRVHTGARRGMAQNLVEFSESVGQPIHQLDQLCGQCLRSFCGVSCPNHL 136
            +  C + C+   VH G  R M Q L   +      IH+ D+ C  C+ SFC   C  H+
Sbjct: 120 SARYCCLMCKHNHVHQGKGRDMIQALAAGNYF---QIHRPDRFCTICMSSFCSACCAEHI 176

Query: 137 VHPHPQGNHAAGPDIITIERLNGWLVIDQEQL-PVEFGQDIHVMVGEDGRHMLPIKRLPA 195
              HP+  +A G  II +  ++ W  +    L P +    + V+    G  + P+ RL A
Sbjct: 177 ERHHPEKANAHGDQIIEVVHVDAWAAVAPSVLVPEDVLHGVQVVHAGGGALVYPVMRLEA 236

Query: 196 EHGDGHDGLVEPDWNLCARAGCNEMFNGNAVCCCMRC 232
                H G V P  + C   GC+EM    A  CC+RC
Sbjct: 237 PPAVQHVGDV-PWQHNCGAPGCHEMILVQAQFCCLRC 272



>Os05g0480900 
          Length = 331

 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 101/231 (43%), Gaps = 19/231 (8%)

Query: 15  EISTISFTPAIRSQDAIGCGYNLTGIQRIK----MNGALWIPILPPPVVDARYQGLCLQC 70
           ++  ++  PA+ ++  +G  Y+  GIQR++     N  L  P +PP     +    C+ C
Sbjct: 99  QVELLAENPAVLARYPVGTEYDWEGIQRLRGDEQTNWILLRPWVPPMYGRKKDFSSCVDC 158

Query: 71  GRRIKGRSN--LCSISCRLLRVHTGAR-RGMAQNLVEFSESVGQPIHQLDQLCGQCLRSF 127
            +RIK  +N   C   C+L +V    + R M + L     S    +H  D  C  C  SF
Sbjct: 159 HQRIKKPTNALYCCTMCKLNQVQEEDQGRDMVEALATGDYSTQALLH--DNFCVLCTSSF 216

Query: 128 CGVSCPNHLVHPHPQ-GNHAAGPDIITIERLNGWLVIDQEQLPVE---FGQDIHVMVGED 183
               C  H+   HP   +      +I +  ++GW  +   +L  E    G  +  +  +D
Sbjct: 217 SSDCCTYHMELHHPDVEDIGVWLVLIEVVYVDGWAAVAPSELVSENVLAGVQVLQVQADD 276

Query: 184 GRHMLPIKRLPAEHGD--GHDGLVEPDWNLCARAGCNEMFNGNAVCCCMRC 232
              + P++R  A   D  GH     P W+ C   GC+EM    A+ CC+RC
Sbjct: 277 ETVLYPLRRTVAAAVDRLGH----VPGWHGCGAPGCHEMIPAQALFCCLRC 323



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.143    0.485 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,935,390
Number of extensions: 456183
Number of successful extensions: 1039
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1037
Number of HSP's successfully gapped: 3
Length of query: 236
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 138
Effective length of database: 11,918,829
Effective search space: 1644798402
Effective search space used: 1644798402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)