BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0183900 Os10g0183900|AK099711
(364 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0183900 Ribosomal RNA adenine methylase transferase fa... 664 0.0
Os07g0509600 Similar to Dimethyladenosine transferase-like ... 171 9e-43
Os06g0490000 Similar to DIMETHYLADENOSINE TRANSFERASE 100 2e-21
Os01g0362200 75 9e-14
>Os10g0183900 Ribosomal RNA adenine methylase transferase family protein
Length = 364
Score = 664 bits (1714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/364 (91%), Positives = 333/364 (91%)
Query: 1 MAGGKIQKKRHXXXXXXXXXXXXXXXRLQGGIPFEKSKGQHILRNPALVDSIVEKAGLKP 60
MAGGKIQKKRH RLQGGIPFEKSKGQHILRNPALVDSIVEKAGLKP
Sbjct: 1 MAGGKIQKKRHGGGAGGGGGGGGGGARLQGGIPFEKSKGQHILRNPALVDSIVEKAGLKP 60
Query: 61 TDTVLEIGPGTGNLTKRLLQAGVKAVVAVELDPRMVLELNRRFQGDPLASRLKVIQGDVL 120
TDTVLEIGPGTGNLTKRLLQAGVKAVVAVELDPRMVLELNRRFQGDPLASRLKVIQGDVL
Sbjct: 61 TDTVLEIGPGTGNLTKRLLQAGVKAVVAVELDPRMVLELNRRFQGDPLASRLKVIQGDVL 120
Query: 121 KCDLPYFDICVANIPYQISSPLTFKLLSHRPIFRCAVIMFQREFAMRLVAQPGDSLYCRL 180
KCDLPYFDICVANIPYQISSPLTFKLLSHRPIFRCAVIMFQREFAMRLVAQPGDSLYCRL
Sbjct: 121 KCDLPYFDICVANIPYQISSPLTFKLLSHRPIFRCAVIMFQREFAMRLVAQPGDSLYCRL 180
Query: 181 SVNVQLLSRVSHLLKVGRNNFRPPPKVDSSVVRIEPRKPLPPVSFKEWDGLVRLCFNRKN 240
SVNVQLLSRVSHLLKVGRNNFRPPPKVDSSVVRIEPRKPLPPVSFKEWDGLVRLCFNRKN
Sbjct: 181 SVNVQLLSRVSHLLKVGRNNFRPPPKVDSSVVRIEPRKPLPPVSFKEWDGLVRLCFNRKN 240
Query: 241 KTLGAIFKQKRVLELLEKNYKTMQSLQLTSDAEKGEEKMSPDDVALLSSMVDDMNMESSY 300
KTLGAIFKQKRVLELLEKNYKTMQSLQLTSDAEKGEEKMSPDDVALLSSMVDDMNMESSY
Sbjct: 241 KTLGAIFKQKRVLELLEKNYKTMQSLQLTSDAEKGEEKMSPDDVALLSSMVDDMNMESSY 300
Query: 301 ENXXXXXXXXXXXXXXXXSRACFKEKIMGILQQGDFAEKRASKLSQVDFLYLLSLFNKAG 360
EN SRACFKEKIMGILQQGDFAEKRASKLSQVDFLYLLSLFNKAG
Sbjct: 301 ENDDDDEMEMDDADMVVESRACFKEKIMGILQQGDFAEKRASKLSQVDFLYLLSLFNKAG 360
Query: 361 IHFS 364
IHFS
Sbjct: 361 IHFS 364
>Os07g0509600 Similar to Dimethyladenosine transferase-like protein
Length = 261
Score = 171 bits (433), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 113/270 (41%), Positives = 146/270 (54%), Gaps = 11/270 (4%)
Query: 95 MVLELNRRFQGDPLASRLKVIQGDVLKCDLPYFDICVANIPYQISSPLTFKLLSHRPIFR 154
MV + R LA +L VI+ D ++ + P FD+CVANIPY ISSPL KLL FR
Sbjct: 1 MVDAVTARVDALGLAHKLTVIRADAVEAEFPEFDVCVANIPYGISSPLIAKLLFGPYRFR 60
Query: 155 CAVIMFQREFAMRLVAQPGDSLYCRLSVNVQLLSRVSHLLKVGRNNFRPPPKVDSSVVRI 214
A ++ Q+EFA RLVA PGDS Y RL+ NV++++ L+ V + +F P PKVDSS+V I
Sbjct: 61 AATLLLQKEFARRLVAAPGDSEYNRLAANVRMVADARLLMDVSKRDFVPMPKVDSSLVEI 120
Query: 215 EPRKPLPPVSFKEWDGLVRLCFNRKNKTLGAIFKQKR-VLELLEKNYKTMQSLQLTSDAE 273
PR P V EW R CF +KNKTLGAIFKQKR VLEL ++ + ++A
Sbjct: 121 RPRAAEPNVDLAEWLAFTRSCFGQKNKTLGAIFKQKRKVLELFRRSRCAEERCDGNANAG 180
Query: 274 KGEEKMSPDDVALLSSMVDDMNMESSYENXXXXXXXXXXXXXXXXSRACFKEKIMGILQQ 333
G ++ L DD +M N A FK KI G L+
Sbjct: 181 GGSRLIA------LGGGDDDGDMSDGDSNEGHDGAPSFSEEEV----AVFKAKITGALES 230
Query: 334 GDFAEKRASKLSQVDFLYLLSLFNKAGIHF 363
+ A KR SKLS + L LL L N+ G+ F
Sbjct: 231 CELAGKRPSKLSNDELLRLLKLLNEQGVRF 260
>Os06g0490000 Similar to DIMETHYLADENOSINE TRANSFERASE
Length = 102
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/101 (59%), Positives = 62/101 (61%), Gaps = 5/101 (4%)
Query: 1 MAGGKIQKKRHXXXXXXXXXXXXXXXRLQGGIPFEKSKGQHILRNPALVDSIVEKAGLKP 60
MAGGKIQKKRH RLQGGI F+KSKGQHILRNPALVDSIVEKAGLKP
Sbjct: 1 MAGGKIQKKRHGGGGGGGGGGGDGA-RLQGGISFDKSKGQHILRNPALVDSIVEKAGLKP 59
Query: 61 TDTVLEIGPGTGNLTKRLLQAGVKAVVAVELDPRMVLELNR 101
TDTVLEIG G + PRMVL LNR
Sbjct: 60 TDTVLEIGSARGTSP----SGSSRPASRPSSLPRMVLALNR 96
>Os01g0362200
Length = 236
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 110/254 (43%), Gaps = 41/254 (16%)
Query: 120 LKCDLPYFDICVANIPYQISSPLTFKLL--SHRPIFRCAVIMFQREFAMRLVAQPGDSLY 177
+ +LP FDICVA+IPY ISSPLT KLL SH F+ FA RL+ PG
Sbjct: 1 MAIELPKFDICVASIPYGISSPLTAKLLIGSH---------RFRARFARRLMGTPGHGER 51
Query: 178 CRLSVNVQLLSRVSHLLKVGRNNFRPPPKVDSSVVRIEPRKPLPP-----VSFKEWDGLV 232
L+ N +L++ V L+ V R F SS+V I P++ P V EW
Sbjct: 52 NLLATNARLVADVRLLMDVSRPEF-------SSLVEIRPKQTRPKEFAAGVELHEWLAFT 104
Query: 233 RLCFNRKNKTLGAIFKQKRVLELLEKNYKTMQSLQLTSDAEKGEEKMSPDD--VALLSSM 290
R C + + +Q + +K+ K ++L + +G +D V ++ +
Sbjct: 105 RACTGQHK-----LQRQHQPPPKKKKSKKKRKTLGVLFKLAQGHAGGGSEDGGVVVVGNN 159
Query: 291 VDDMNMESSYENXXXXXXXXXXXXXXXXSRACFKEKIMGILQQGDFAEKRASKLSQVDFL 350
DD + + + FKE+I G L+ A K AS+L + L
Sbjct: 160 EDDRDGDVGVASGFSREEV-----------VAFKERIAGALRSAALAGKTASQLPNDELL 208
Query: 351 YLLSLFNKAGIHFS 364
LL LF GI F
Sbjct: 209 RLLRLFIHWGIRFG 222
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,877,864
Number of extensions: 416778
Number of successful extensions: 882
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 881
Number of HSP's successfully gapped: 4
Length of query: 364
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 262
Effective length of database: 11,709,973
Effective search space: 3068012926
Effective search space used: 3068012926
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)