Os10g0183900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribosomal RNA adenine methylase transferase family protein.
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Os10g0183900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribosomal RNA adenine methylase transferase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.89 | 0.357 | 11.6 | 0.897 | 0.525 | 0.548 | 0.725 | -0.285 | 0.361 | 19.6 | 20.5 | 114 | -- | -- |
| 58.3 | 0.356 | 11.6 | 0.937 | 0.531 | 0.563 | 0.709 | -- | 0.372 | 19.7 | 20.55 | 113 | -- | -- |
| 59.36 | 0.359 | 11.6 | 0.877 | 0.526 | 0.554 | -- | -0.283 | 0.361 | 19.6 | 20.56 | 113 | -- | -- |
| 59.69 | 0.36 | 11.6 | 0.914 | 0.515 | 0.595 | -- | -- | 0.367 | 19.6 | 20.49 | 153 | -- | -- |
| 67.45 | 0.382 | 11.7 | 0.953 | -- | 0.533 | -- | 0.147 | 0.229 | -- | 24.7 | 296 | -- | -- |
| 71.31 | 0.396 | 11.6 | 1.1 | 0.537 | -- | 0.772 | -- | 0.48 | 18.8 | -- | -- | -- | -- |
| 72.81 | 0.4 | 11.6 | 1.08 | 0.541 | -- | -- | -- | 0.482 | 18.7 | -- | -- | -- | -- |
| 67.06 | 0.381 | 11.7 | 0.914 | -- | 0.562 | -- | -- | 0.217 | -- | 24.96 | 343 | -- | -- |
| 72.33 | 0.396 | 11.6 | -- | 0.448 | 0.686 | -- | -- | 0.281 | 18.6 | 19.8 | 24388 | -- | -- |
| 88.07 | 0.439 | 11.6 | 1.07 | -- | -- | -- | -- | 0.472 | -- | -- | -- | -- | -- |
| 103.78 | 0.477 | 11.6 | -- | 0.528 | -- | -- | -- | 0.362 | 18.8 | -- | -- | -- | -- |
| 81.05 | 0.419 | 11.7 | -- | -- | 1.03 | -- | -- | 0.158 | -- | 16.45 | 47520 | -- | -- |
| 118.35 | 0.508 | 11.6 | -- | -- | -- | -- | -- | 0.353 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.93 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 20 |
| 2 | 52.45 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 3 | 52.97 | temperature | 20 | 90 | > th | dose independent | rect. | 8 | 20 |
| 8 | 53.17 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 21 |
| 54 | 55.40 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 56 | 55.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 58 | 55.48 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 80 | 55.90 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 9 |
| 108 | 56.17 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 10 |
| 120 | 56.34 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 14 |
| 146 | 56.78 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 18 |
| 161 | 56.86 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 198 | 57.20 | temperature | 20 | 10 | > th | dose independent | rect. | 22 | 14 |
| 208 | 57.25 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 214 | 57.33 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 237 | 57.56 | temperature | 20 | 10 | > th | dose independent | rect. | 22 | 16 |
| 325 | 58.06 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 16 |
| 326 | 58.07 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 18 |
| 327 | 58.10 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 7 |
| 349 | 58.19 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 353 | 58.20 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 16 |
| 367 | 58.22 | temperature | 20 | 90 | < th | dose independent | rect. | 12 | 19 |
| 372 | 58.24 | temperature | 15 | 90 | > th | dose dependent | sin | 8 | NA |
| 383 | 58.29 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 14 |
| 401 | 58.35 | temperature | 20 | 4320 | > th | dose independent | rect. | 15 | 9 |
| 447 | 58.47 | temperature | 20 | 90 | > th | dose independent | rect. | 18 | 23 |
| 451 | 58.49 | temperature | 20 | 90 | > th | dose independent | sin | 8 | NA |
| 464 | 58.52 | temperature | 20 | 10 | < th | dose independent | rect. | 16 | 17 |
| 476 | 58.54 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 21 |
| 479 | 58.55 | temperature | 20 | 10 | < th | dose independent | rect. | 14 | 19 |
| 504 | 58.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 9 |
| 508 | 58.62 | temperature | 20 | 90 | < th | dose independent | sin | 9 | NA |
| 531 | 58.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 8 |
| 604 | 58.79 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 6 |
| 634 | 58.84 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 647 | 58.86 | temperature | 20 | 10 | > th | dose independent | sin | 8 | NA |
| 654 | 58.86 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 669 | 58.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 14 | 17 |
| 697 | 58.91 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 722 | 58.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 3 |
| 758 | 58.97 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 760 | 58.97 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 5 |
| 771 | 58.98 | temperature | 20 | 4320 | < th | dose independent | sin | 18 | NA |
| 777 | 58.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 18 |
| 797 | 59.00 | temperature | 20 | 1440 | < th | dose independent | rect. | 14 | 17 |
| 839 | 59.03 | temperature | 20 | 4320 | > th | dose independent | sin | 18 | NA |
| 851 | 59.04 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 852 | 59.04 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 977 | 59.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |