BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0181600 Os10g0181600|AK059127
         (361 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0181600  SAM (and some other nucleotide) binding motif ...   680   0.0  

>Os10g0181600 SAM (and some other nucleotide) binding motif domain containing
           protein
          Length = 361

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/344 (95%), Positives = 330/344 (95%)

Query: 18  DVPRRRNMVAIXXXXXXXXXXXXXXKEGSLERPAWSGETPLSRLVGALIAFKPLYSLMKL 77
           DVPRRRNMVAI              KEGSLERPAWSGETPLSRLVGALIAFKPLYSLMKL
Sbjct: 18  DVPRRRNMVAIVAATTTTGAGPAVPKEGSLERPAWSGETPLSRLVGALIAFKPLYSLMKL 77

Query: 78  ASREVIIRTAEKSNVPWREMTKQVLESDVYEVFDRIRDLNLVYPDYYLNPFHAYDEGNLS 137
           ASREVIIRTAEKSNVPWREMTKQVLESDVYEVFDRIRDLNLVYPDYYLNPFHAYDEGNLS
Sbjct: 78  ASREVIIRTAEKSNVPWREMTKQVLESDVYEVFDRIRDLNLVYPDYYLNPFHAYDEGNLS 137

Query: 138 WLAAAEAEPATMSIAKRAIPDAGSIEEANQIVRGNWLNAIEEHHLKYSGNCQINDILDIG 197
           WLAAAEAEPATMSIAKRAIPDAGSIEEANQIVRGNWLNAIEEHHLKYSGNCQINDILDIG
Sbjct: 138 WLAAAEAEPATMSIAKRAIPDAGSIEEANQIVRGNWLNAIEEHHLKYSGNCQINDILDIG 197

Query: 198 CSVGVSTRYLAEKFPSARTVGLDLSPYFLAVAAHKEEKLSRQNPIRWVHANGEATGLPSN 257
           CSVGVSTRYLAEKFPSARTVGLDLSPYFLAVAAHKEEKLSRQNPIRWVHANGEATGLPSN
Sbjct: 198 CSVGVSTRYLAEKFPSARTVGLDLSPYFLAVAAHKEEKLSRQNPIRWVHANGEATGLPSN 257

Query: 258 SFDLVSLAYVCHECPARAITGLVNEAFRLLRPGGTIALTDNSPKSKVLQELSPVLFTLMK 317
           SFDLVSLAYVCHECPARAITGLVNEAFRLLRPGGTIALTDNSPKSKVLQELSPVLFTLMK
Sbjct: 258 SFDLVSLAYVCHECPARAITGLVNEAFRLLRPGGTIALTDNSPKSKVLQELSPVLFTLMK 317

Query: 318 STEPFLDEYYMLDLEETMRQAGFVNVHSILTDPRHRTVTATVPF 361
           STEPFLDEYYMLDLEETMRQAGFVNVHSILTDPRHRTVTATVPF
Sbjct: 318 STEPFLDEYYMLDLEETMRQAGFVNVHSILTDPRHRTVTATVPF 361



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,110,840
Number of extensions: 445828
Number of successful extensions: 1205
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1205
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 259
Effective length of database: 11,709,973
Effective search space: 3032883007
Effective search space used: 3032883007
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)