Os10g0181600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SAM (and some other nucleotide) binding motif domain containing protein.
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Os10g0181600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SAM (and some other nucleotide) binding motif domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 98.9 | 0.467 | 13.1 | -0.684 | 2.62 | -0.0959 | -1.11 | -2.88 | -0.799 | 9.59 | 1011 | 6650 | -- | -- |
| 116.83 | 0.507 | 13.2 | -1.49 | 2.62 | -0.159 | -1.08 | -- | -0.949 | 9.57 | 1009 | 22724 | -- | -- |
| 103.49 | 0.474 | 13.1 | -0.727 | 2.62 | -0.116 | -- | -2.87 | -0.803 | 9.61 | 1011 | 6650 | -- | -- |
| 120.48 | 0.515 | 13.2 | -1.51 | 2.63 | -0.16 | -- | -- | -0.888 | 9.54 | 1008 | 47520 | -- | -- |
| 508.1 | 1.05 | 13.2 | -0.674 | -- | 0.0542 | -- | -2.47 | -0.762 | -- | 1010 | 9935 | -- | -- |
| 118.45 | 0.51 | 13.2 | -1.48 | 2.61 | -- | -1.02 | -- | -0.987 | 9.58 | -- | -- | -- | -- |
| 122.35 | 0.518 | 13.2 | -1.52 | 2.61 | -- | -- | -- | -0.988 | 9.57 | -- | -- | -- | -- |
| 516.46 | 1.06 | 13.3 | -1.54 | -- | -1.44 | -- | -- | -0.998 | -- | 1015 | 47520 | -- | -- |
| 145.68 | 0.562 | 13.2 | -- | 2.61 | 1.61 | -- | -- | -0.851 | 9.58 | 1004 | 47520 | -- | -- |
| 524.65 | 1.07 | 13.3 | -1.54 | -- | -- | -- | -- | -0.982 | -- | -- | -- | -- | -- |
| 183.14 | 0.633 | 13.2 | -- | 2.61 | -- | -- | -- | -0.819 | 9.62 | -- | -- | -- | -- |
| 529.86 | 1.07 | 13.2 | -- | -- | 1.37 | -- | -- | -0.617 | -- | 1017 | 41786 | -- | -- |
| 587.09 | 1.13 | 13.3 | -- | -- | -- | -- | -- | -0.811 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 90.80 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 2 | 91.03 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 3 | 91.19 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 13 |
| 4 | 91.20 | wind | 1 | 43200 | < th | dose independent | rect. | 13 | 12 |
| 5 | 91.28 | wind | 1 | 43200 | > th | dose independent | rect. | 14 | 11 |
| 30 | 92.96 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 38 | 93.66 | wind | 1 | 43200 | < th | dose dependent | sin | 18 | NA |
| 40 | 93.78 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 3 |
| 43 | 93.84 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 3 |
| 50 | 94.08 | wind | 1 | 43200 | < th | dose dependent | rect. | 13 | 10 |
| 51 | 94.14 | wind | 1 | 43200 | < th | dose dependent | rect. | 7 | 18 |
| 58 | 94.28 | wind | 1 | 43200 | > th | dose independent | sin | 17 | NA |
| 63 | 94.37 | wind | 1 | 43200 | < th | dose independent | sin | 17 | NA |
| 64 | 94.39 | wind | 1 | 14400 | > th | dose independent | rect. | 22 | 3 |
| 83 | 94.80 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 9 |
| 86 | 94.86 | wind | 1 | 43200 | < th | dose dependent | rect. | 15 | 10 |
| 107 | 95.44 | humidity | 90 | 270 | < th | dose independent | rect. | 16 | 9 |
| 122 | 95.80 | radiation | 10 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 135 | 95.85 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 6 |
| 146 | 96.01 | humidity | 60 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 150 | 96.06 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 161 | 96.32 | temperature | 20 | 720 | > th | dose dependent | sin | 18 | NA |
| 169 | 96.41 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 170 | 96.41 | humidity | 50 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 179 | 96.52 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 201 | 96.64 | humidity | 50 | 43200 | > th | dose dependent | rect. | 17 | 21 |
| 205 | 96.67 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 14 |
| 223 | 96.83 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 225 | 96.83 | humidity | 50 | 43200 | > th | dose dependent | rect. | 17 | 7 |
| 227 | 96.84 | humidity | 90 | 43200 | < th | dose dependent | rect. | 18 | 4 |
| 238 | 96.93 | temperature | 20 | 720 | > th | dose dependent | rect. | 14 | 7 |
| 239 | 96.94 | temperature | 15 | 720 | > th | dose dependent | rect. | 11 | 11 |
| 244 | 96.96 | temperature | 20 | 43200 | > th | dose independent | rect. | 20 | 9 |
| 248 | 96.97 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 251 | 96.97 | humidity | 50 | 43200 | > th | dose dependent | rect. | 8 | 21 |
| 253 | 96.98 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 4 |
| 269 | 96.99 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 271 | 97.00 | temperature | 20 | 43200 | < th | dose independent | rect. | 20 | 9 |
| 277 | 97.02 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 7 |
| 287 | 97.04 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 293 | 97.05 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 296 | 97.06 | temperature | 20 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 308 | 97.09 | temperature | 20 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 342 | 97.14 | humidity | 50 | 43200 | > th | dose dependent | no | NA | NA |
| 347 | 97.15 | wind | 5 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 358 | 97.16 | humidity | 50 | 43200 | > th | dose dependent | rect. | 24 | 23 |
| 375 | 97.19 | humidity | 50 | 43200 | > th | dose dependent | rect. | 11 | 23 |
| 388 | 97.21 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 15 | 10 |
| 392 | 97.21 | humidity | 50 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 393 | 97.22 | temperature | 20 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 416 | 97.24 | humidity | 90 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 417 | 97.24 | temperature | 15 | 10 | > th | dose dependent | rect. | 18 | 9 |
| 434 | 97.27 | humidity | 70 | 43200 | > th | dose independent | rect. | 17 | 13 |
| 436 | 97.27 | humidity | 50 | 43200 | > th | dose dependent | rect. | 1 | 13 |
| 449 | 97.29 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 456 | 97.30 | temperature | 20 | 43200 | > th | dose independent | sin | 12 | NA |
| 488 | 97.34 | humidity | 60 | 43200 | > th | dose dependent | rect. | 2 | 11 |
| 539 | 97.41 | temperature | 20 | 43200 | < th | dose independent | sin | 12 | NA |
| 568 | 97.45 | wind | 1 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 591 | 97.47 | humidity | 50 | 43200 | > th | dose dependent | sin | 5 | NA |
| 593 | 97.47 | humidity | 90 | 43200 | < th | dose dependent | rect. | 11 | 17 |
| 601 | 97.48 | humidity | 90 | 43200 | < th | dose dependent | rect. | 8 | 20 |
| 625 | 97.51 | humidity | 50 | 43200 | > th | dose dependent | sin | 16 | NA |
| 664 | 97.54 | humidity | 70 | 43200 | > th | dose independent | rect. | 13 | 16 |
| 687 | 97.56 | humidity | 90 | 43200 | < th | dose dependent | sin | 16 | NA |
| 929 | 97.77 | humidity | 90 | 43200 | < th | dose dependent | rect. | 17 | 22 |