BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0177200 Os10g0177200|AK064016
(386 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0177200 EF-Hand type domain containing protein 635 0.0
Os03g0250000 EF-Hand type domain containing protein 113 2e-25
>Os10g0177200 EF-Hand type domain containing protein
Length = 386
Score = 635 bits (1639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/363 (87%), Positives = 317/363 (87%)
Query: 1 MASGKMEXXXXXXXXXXXXXXXXXXXXDGSEILQLVENKEAFGKFVEQKFRLLDADGDGR 60
MASGKME DGSEILQLVENKEAFGKFVEQKFRLLDADGDGR
Sbjct: 1 MASGKMENGQQQQQQEVRRRRNGEVVVDGSEILQLVENKEAFGKFVEQKFRLLDADGDGR 60
Query: 61 LSVRELQPAVADIGAAIGLPARGSSAQADHIYSEVLNEFTKGKKESVSKSEFQRVLSDIL 120
LSVRELQPAVADIGAAIGLPARGSSAQADHIYSEVLNEFTKGKKESVSKSEFQRVLSDIL
Sbjct: 61 LSVRELQPAVADIGAAIGLPARGSSAQADHIYSEVLNEFTKGKKESVSKSEFQRVLSDIL 120
Query: 121 LGMAAGLKRDPIVILRINGEDLNEFVESPRYEPEMAAIFSQVESGNSTLQQCMLAAIRQL 180
LGMAAGLKRDPIVILRINGEDLNEFVESPRYEPEMAAIFSQVESGNSTLQQCMLAAIRQL
Sbjct: 121 LGMAAGLKRDPIVILRINGEDLNEFVESPRYEPEMAAIFSQVESGNSTLQQCMLAAIRQL 180
Query: 181 TVDHGMPPASDSWVMENIIEPALQELHGDNLEQPVTQEVFFQEFRKFLAILTQRLQGHPV 240
TVDHGMPPASDSWVMENIIEPALQELHGDNLEQPVTQEVFFQEFRKFLAILTQRLQGHPV
Sbjct: 181 TVDHGMPPASDSWVMENIIEPALQELHGDNLEQPVTQEVFFQEFRKFLAILTQRLQGHPV 240
Query: 241 IVAHTENTFDGNGIXXXXXXXXXXXXXXDCVWRGVPKEKDRTAKQYIRVAFDRMADSINL 300
IVAHTENTFDGNGI DCVWRGVPKEKDRTAKQYIRVAFDRMADSINL
Sbjct: 241 IVAHTENTFDGNGIKKLLSNKLELDKLLDCVWRGVPKEKDRTAKQYIRVAFDRMADSINL 300
Query: 301 PPYGXXXXXXXXXXXXFKMAKAEDGKAVDETEFKKLLTEILGAVMLQLDGNPISVSTNSV 360
PPYG FKMAKAEDGKAVDETEFKKLLTEILGAVMLQLDGNPISVSTNSV
Sbjct: 301 PPYGAVEQVDAVVDEAFKMAKAEDGKAVDETEFKKLLTEILGAVMLQLDGNPISVSTNSV 360
Query: 361 LHE 363
LHE
Sbjct: 361 LHE 363
>Os03g0250000 EF-Hand type domain containing protein
Length = 143
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 60/70 (85%)
Query: 28 DGSEILQLVENKEAFGKFVEQKFRLLDADGDGRLSVRELQPAVADIGAAIGLPARGSSAQ 87
DGSEI +LVE++EAFG F E KFR LDADGDGRLSVRELQPAV IGAA+GLPARGSS
Sbjct: 36 DGSEIRELVEDREAFGMFAESKFRELDADGDGRLSVRELQPAVEGIGAALGLPARGSSPN 95
Query: 88 ADHIYSEVLN 97
ADHIYSEV N
Sbjct: 96 ADHIYSEVQN 105
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.134 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,325,742
Number of extensions: 383727
Number of successful extensions: 1267
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1268
Number of HSP's successfully gapped: 2
Length of query: 386
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 283
Effective length of database: 11,657,759
Effective search space: 3299145797
Effective search space used: 3299145797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)