Os03g0250000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : EF-Hand type domain containing protein.
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Os03g0250000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : EF-Hand type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.27 | 0.298 | 12 | -0.373 | 1.26 | -2.55 | 3.2 | -3.48 | 0.0139 | 5.19 | 0.4399 | 706 | -- | -- |
| 41.78 | 0.301 | 12 | -0.417 | 0.414 | -1.59 | 0.407 | -- | 0.0374 | 4.47 | 0.4348 | 730 | -- | -- |
| 42.19 | 0.303 | 12 | -0.444 | 0.606 | -1.83 | -- | 0.333 | 0.00887 | 4.72 | 0.7506 | 717 | -- | -- |
| 41.89 | 0.301 | 12 | -0.447 | 0.569 | -1.75 | -- | -- | 0.008 | 4.59 | 0.43 | 717 | -- | -- |
| 42.61 | 0.304 | 12 | -0.409 | -- | -1.25 | -- | 0.381 | 0.022 | -- | 0.44 | 798 | -- | -- |
| 48.02 | 0.325 | 12 | -0.293 | 0.88 | -- | -0.192 | -- | 0.0746 | 18.3 | -- | -- | -- | -- |
| 48.11 | 0.325 | 12 | -0.29 | 0.879 | -- | -- | -- | 0.0739 | 18.3 | -- | -- | -- | -- |
| 42.73 | 0.304 | 12 | -0.397 | -- | -1.25 | -- | -- | 0.0242 | -- | 0.4341 | 802 | -- | -- |
| 46.68 | 0.318 | 12 | -- | 0.531 | -1.67 | -- | -- | 0.0611 | 4.32 | 0.7785 | 701 | -- | -- |
| 88.2 | 0.439 | 12 | -0.314 | -- | -- | -- | -- | 0.055 | -- | -- | -- | -- | -- |
| 50.34 | 0.332 | 12 | -- | 0.883 | -- | -- | -- | 0.106 | 18.3 | -- | -- | -- | -- |
| 46.87 | 0.319 | 12 | -- | -- | -1.22 | -- | -- | 0.0618 | -- | 0.65 | 795 | -- | -- |
| 90.8 | 0.445 | 12 | -- | -- | -- | -- | -- | 0.0898 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.77 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 2 | 39.77 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 7 | 22 |
| 3 | 39.79 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 6 | 39.92 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 14 | 15 |
| 10 | 40.00 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 19 | 40.15 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 15 | NA |
| 20 | 40.15 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 17 | 19 |
| 21 | 40.15 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 15 | 20 |
| 40 | 40.22 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 6 |
| 46 | 40.23 | wind | 1.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 55 | 40.26 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 56 | 40.27 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 4 |
| 68 | 40.29 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 77 | 40.31 | radiation | 1.0 | 720 | < th | dose dependent | sin | 14 | NA |
| 95 | 40.34 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 14 | 4 |
| 99 | 40.36 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 19 | 12 |
| 112 | 40.38 | humidity | 80.0 | 43200 | > th | dose dependent | no | NA | NA |
| 121 | 40.41 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 11 | 17 |
| 148 | 40.47 | humidity | 90.0 | 43200 | < th | dose independent | sin | 12 | NA |
| 171 | 40.51 | radiation | 1.0 | 720 | < th | dose independent | rect. | 14 | 15 |
| 189 | 40.55 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 5 |
| 196 | 40.55 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 3 | 23 |
| 197 | 40.56 | radiation | 1.0 | 720 | < th | dose independent | rect. | 14 | 7 |
| 201 | 40.56 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 14 | 7 |
| 211 | 40.58 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 20 | 11 |
| 237 | 40.62 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 4 | 15 |
| 266 | 40.66 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 5 | NA |
| 289 | 40.68 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 7 | 11 |
| 319 | 40.72 | radiation | 1.0 | 720 | < th | dose independent | rect. | 7 | 22 |
| 342 | 40.75 | humidity | 90.0 | 43200 | > th | dose independent | sin | 11 | NA |
| 346 | 40.75 | radiation | 1.0 | 720 | < th | dose dependent | no | NA | NA |
| 402 | 40.84 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 424 | 40.86 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 456 | 40.90 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 15 | 8 |
| 593 | 41.04 | radiation | 1.0 | 720 | > th | dose independent | sin | 23 | NA |
| 601 | 41.04 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 19 | NA |
| 602 | 41.04 | radiation | 1.0 | 720 | < th | dose dependent | sin | 0 | NA |
| 605 | 41.04 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 606 | 41.05 | radiation | 1.0 | 720 | < th | dose independent | sin | 15 | NA |
| 634 | 41.08 | wind | 1.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 638 | 41.08 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 650 | 41.10 | radiation | 1.0 | 720 | > th | dose independent | rect. | 13 | 6 |
| 690 | 41.13 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 761 | 41.21 | humidity | 80.0 | 30 | > th | dose independent | rect. | 15 | 8 |
| 902 | 41.33 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 958 | 41.39 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 959 | 41.39 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 961 | 41.39 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 984 | 41.42 | radiation | 1.0 | 720 | > th | dose independent | sin | 15 | NA |