BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0168900 Os10g0168900|AK068977
         (96 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0168900  Conserved hypothetical protein                      149   4e-37
Os06g0626466  Conserved hypothetical protein                       79   6e-16
Os11g0632033                                                       70   4e-13

>Os10g0168900 Conserved hypothetical protein
          Length = 96

 Score =  149 bits (377), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 76/96 (79%), Positives = 76/96 (79%)

Query: 1  MDGIPKLTANELRRQRDRERYAALSVEEKAARVQKNRENRKRKKSASTSGTGVLGDIKNL 60
          MDGIPKLTANELRRQRDRERYAALSVEEKAARVQKNRENRKRKKSASTSGTGVLGDIKNL
Sbjct: 1  MDGIPKLTANELRRQRDRERYAALSVEEKAARVQKNRENRKRKKSASTSGTGVLGDIKNL 60

Query: 61 SLHNGSQTVDCXXXXXXXXXXXXXXXXXXXXRNRQT 96
          SLHNGSQTVDC                    RNRQT
Sbjct: 61 SLHNGSQTVDCQPSFQPVPSSTPVSSCTPVCRNRQT 96



>Os06g0626466 Conserved hypothetical protein
          Length = 107

 Score = 79.3 bits (194), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 40/60 (66%), Positives = 47/60 (78%)

Query: 1  MDGIPKLTANELRRQRDRERYAALSVEEKAARVQKNRENRKRKKSASTSGTGVLGDIKNL 60
          MDG+ KLTANEL+ QR RERY ALSVEEK A VQ+N ENR+RK SASTSGT V   + ++
Sbjct: 14 MDGLSKLTANELKSQRARERYTALSVEEKGALVQRNPENRERKNSASTSGTDVAAIVSDV 73



>Os11g0632033 
          Length = 244

 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 46/61 (75%)

Query: 1   MDGIPKLTANELRRQRDRERYAALSVEEKAARVQKNRENRKRKKSASTSGTGVLGDIKNL 60
           +D I  L+A EL R+RD+E YA+L  E+K A++QKNR+ R+RKK A+ S TG LGDI NL
Sbjct: 138 LDDITNLSAIELGRKRDKEMYASLPAEKKEAKLQKNRDYRQRKKEATISPTGTLGDITNL 197

Query: 61  S 61
           +
Sbjct: 198 T 198




 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 43/58 (74%)

Query: 4   IPKLTANELRRQRDRERYAALSVEEKAARVQKNRENRKRKKSASTSGTGVLGDIKNLS 61
           +  L+A EL+R+ DRE YA+LS EEK A++Q NR+ R+RK+ A TS TG L DI NLS
Sbjct: 88  VTNLSAVELKRKPDREVYASLSAEEKEAKLQNNRDYRQRKEEAKTSLTGTLDDITNLS 145



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.125    0.333 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,175,192
Number of extensions: 65419
Number of successful extensions: 419
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 419
Number of HSP's successfully gapped: 4
Length of query: 96
Length of database: 17,035,801
Length adjustment: 65
Effective length of query: 31
Effective length of database: 13,641,891
Effective search space: 422898621
Effective search space used: 422898621
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 149 (62.0 bits)