BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0159700 Os10g0159700|AK107162
         (197 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0159700  HSP20-like chaperone domain containing protein      358   e-100
Os09g0345500  HSP20-like chaperone domain containing protein       67   6e-12

>Os10g0159700 HSP20-like chaperone domain containing protein
          Length = 197

 Score =  358 bits (920), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/197 (97%), Positives = 192/197 (97%)

Query: 1   MSTVTSCTFLSIRPTVSSAGSLLSKKPAAFVSLASERKSRPLSPCFAISSNKPGDPKIDV 60
           MSTVTSCTFLSIRPTVSSAGSLLSKKPAAFVSLASERKSRPLSPCFAISSNKPGDPKIDV
Sbjct: 1   MSTVTSCTFLSIRPTVSSAGSLLSKKPAAFVSLASERKSRPLSPCFAISSNKPGDPKIDV 60

Query: 61  SPFSISPVVLVNPVPVDGERWQVAENKDEVSLWFDVPGLSPADLIVEIDEDVLVIXXXXX 120
           SPFSISPVVLVNPVPVDGERWQVAENKDEVSLWFDVPGLSPADLIVEIDEDVLVI     
Sbjct: 61  SPFSISPVVLVNPVPVDGERWQVAENKDEVSLWFDVPGLSPADLIVEIDEDVLVIKKKKK 120

Query: 121 ASPKSNYNTPTSGAIADHQEATADEFSGGGIYARLLLPAGYSREGVQAKLTSGELKLTIG 180
           ASPKSNYNTPTSGAIADHQEATADEFSGGGIYARLLLPAGYSREGVQAKLTSGELKLTIG
Sbjct: 121 ASPKSNYNTPTSGAIADHQEATADEFSGGGIYARLLLPAGYSREGVQAKLTSGELKLTIG 180

Query: 181 KVKESVRRKINVDISVK 197
           KVKESVRRKINVDISVK
Sbjct: 181 KVKESVRRKINVDISVK 197



>Os09g0345500 HSP20-like chaperone domain containing protein
          Length = 200

 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 92/205 (44%), Gaps = 34/205 (16%)

Query: 1   MSTVTSCTFL--SIRPTVSSA--GSLL--SKKPAAFVSLASERKSRPLSPCFAISSNKPG 54
           MS VTS   L     P V  A  G+ L  + KPAA  +LA +RKS  L      ++N P 
Sbjct: 1   MSMVTSFNLLMSQTAPPVLKAPFGAALRSAGKPAA--ALALQRKSPRL---LVRANNSPK 55

Query: 55  DPKIDVSPFSISPVVLVNPV--PVDGERWQVAENKDEVSLWFDVPGLSPADLIVEIDEDV 112
            P     PF I+P  LV+P   P  G RW++ E+ D V LWF V  +    L V I+ D 
Sbjct: 56  SPADTGHPFGIAPFALVHPKFPPTSGNRWRITEDDDYVKLWFHVGEIDREKLKVRIEHDT 115

Query: 113 LVIXXXXXASPKSNYNTPTSGAIADHQEATADEFSGGGIYARLLLPAG-YSREGVQAKLT 171
           +++               + G   D     A+         RLLLP   Y    V+A+LT
Sbjct: 116 VLLV--------------SYGGAGDETSTPANSLD-----VRLLLPNKPYDTAKVEAELT 156

Query: 172 SGELKLTIGKVKE-SVRRKINVDIS 195
            G L +T+ K K    R K+ + I+
Sbjct: 157 FGTLLVTVAKRKPLQGRDKVGIPIT 181



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,843,381
Number of extensions: 300261
Number of successful extensions: 597
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 598
Number of HSP's successfully gapped: 2
Length of query: 197
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 101
Effective length of database: 12,023,257
Effective search space: 1214348957
Effective search space used: 1214348957
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 153 (63.5 bits)