BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0130500 Os10g0130500|AK120243
(185 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0130500 Peptidase C48, SUMO/Sentrin/Ubl1 family protein 389 e-109
Os06g0474600 258 2e-69
Os05g0309000 254 3e-68
Os02g0472200 183 6e-47
Os12g0551900 Peptidase C48, SUMO/Sentrin/Ubl1 family protein 128 2e-30
Os11g0646232 128 2e-30
Os07g0267400 Peptidase C48, SUMO/Sentrin/Ubl1 family protein 101 2e-22
>Os10g0130500 Peptidase C48, SUMO/Sentrin/Ubl1 family protein
Length = 185
Score = 389 bits (1000), Expect = e-109, Method: Compositional matrix adjust.
Identities = 185/185 (100%), Positives = 185/185 (100%)
Query: 1 FSTIFSFCRRCSYQCRSLDRKIAFLDPAVVNFNNQLSKEKEIDDYLFNALVKQNGYDHIL 60
FSTIFSFCRRCSYQCRSLDRKIAFLDPAVVNFNNQLSKEKEIDDYLFNALVKQNGYDHIL
Sbjct: 1 FSTIFSFCRRCSYQCRSLDRKIAFLDPAVVNFNNQLSKEKEIDDYLFNALVKQNGYDHIL 60
Query: 61 LPYLSHHHWILFVINIDDSKICVYDSLRKGTDNYQTIMNALNRAYVKYRRSKRTYGRCAI 120
LPYLSHHHWILFVINIDDSKICVYDSLRKGTDNYQTIMNALNRAYVKYRRSKRTYGRCAI
Sbjct: 61 LPYLSHHHWILFVINIDDSKICVYDSLRKGTDNYQTIMNALNRAYVKYRRSKRTYGRCAI 120
Query: 121 DATSFRIFENQYIYRQPALTNLCGMYVMWYMLCFVESGHLLPRNAEKLGLETSEMLPHVF 180
DATSFRIFENQYIYRQPALTNLCGMYVMWYMLCFVESGHLLPRNAEKLGLETSEMLPHVF
Sbjct: 121 DATSFRIFENQYIYRQPALTNLCGMYVMWYMLCFVESGHLLPRNAEKLGLETSEMLPHVF 180
Query: 181 TALTD 185
TALTD
Sbjct: 181 TALTD 185
>Os06g0474600
Length = 232
Score = 258 bits (658), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 129/175 (73%), Positives = 144/175 (82%), Gaps = 2/175 (1%)
Query: 11 CSYQCRSLDRKIAFLDPAVVNFNNQLSKEKEIDDYLFNALVKQNGYDHILLPYLSHHHWI 70
CSYQ RS++ KIAFLDP VVNF+ Q + E EID YLF+ALVK NG DHILLPYLSHHHWI
Sbjct: 37 CSYQVRSMNHKIAFLDPTVVNFDKQCTSEAEIDRYLFDALVKLNGCDHILLPYLSHHHWI 96
Query: 71 LFVINIDDSKICVYDSLRKGTDNYQTIMNALNRAYVKYRRSKRTYGRCAIDATSFRIFEN 130
L VINIDDS IC+YDSLR G D YQTI++ALNRAY KYRRS R+YGRC IDAT FRIFE+
Sbjct: 97 LLVINIDDSSICIYDSLR-GIDKYQTILSALNRAYKKYRRSGRSYGRCKIDATEFRIFEH 155
Query: 131 QYIYRQPALTNLCGMYVMWYMLCFVESGHLLPRNAEKLGLETSEMLPHVFTALTD 185
+YI RQ T+LCG YVM YML FVE G+ RNAEKLGL+TSE+LPHVF ALTD
Sbjct: 156 KYILRQLEATDLCGFYVMRYMLYFVEDGY-NHRNAEKLGLDTSEILPHVFKALTD 209
>Os05g0309000
Length = 525
Score = 254 bits (648), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 123/178 (69%), Positives = 140/178 (78%), Gaps = 1/178 (0%)
Query: 8 CRRCSYQCRSLDRKIAFLDPAVVNFNNQLSKEKEIDDYLFNALVKQNGYDHILLPYLSHH 67
++ RS++ KIAFLDPAVVNF+ Q + E EID YLF+AL K NG DHIL PYLSHH
Sbjct: 321 AKKGGRDVRSMNHKIAFLDPAVVNFDKQCTSEAEIDRYLFDALAKLNGCDHILFPYLSHH 380
Query: 68 HWILFVINIDDSKICVYDSLRKGTDNYQTIMNALNRAYVKYRRSKRTYGRCAIDATSFRI 127
HWIL VINIDDS IC+YDSLR+G D YQTI +ALNRAY KY RS R+YGRC IDAT FRI
Sbjct: 381 HWILLVINIDDSSICIYDSLRRGIDKYQTIFSALNRAYKKYCRSGRSYGRCKIDATEFRI 440
Query: 128 FENQYIYRQPALTNLCGMYVMWYMLCFVESGHLLPRNAEKLGLETSEMLPHVFTALTD 185
FE++YI RQP +LCG YVM YML FVE G+ RNAEKLGL+TSE+LPHVF ALTD
Sbjct: 441 FEHKYILRQPEAIDLCGFYVMRYMLYFVEDGYNH-RNAEKLGLDTSEILPHVFKALTD 497
>Os02g0472200
Length = 424
Score = 183 bits (465), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 89/126 (70%), Positives = 102/126 (80%), Gaps = 1/126 (0%)
Query: 60 LLPYLSHHHWILFVINIDDSKICVYDSLRKGTDNYQTIMNALNRAYVKYRRSKRTYGRCA 119
LL S HHWIL VINIDDS IC+YDSLR+G D YQTI++ALN+AY KYRRS+R+YGRC
Sbjct: 251 LLQLWSFHHWILLVINIDDSAICIYDSLRRGIDKYQTILSALNKAYKKYRRSERSYGRCM 310
Query: 120 IDATSFRIFENQYIYRQPALTNLCGMYVMWYMLCFVESGHLLPRNAEKLGLETSEMLPHV 179
IDAT FR+FE++YI RQP T LCG YVM YML FVE G+ RNAEKLGL+TSE+LPHV
Sbjct: 311 IDATEFRVFEHKYILRQPEATYLCGFYVMRYMLYFVEDGYNH-RNAEKLGLDTSEILPHV 369
Query: 180 FTALTD 185
F LTD
Sbjct: 370 FKTLTD 375
>Os12g0551900 Peptidase C48, SUMO/Sentrin/Ubl1 family protein
Length = 853
Score = 128 bits (322), Expect = 2e-30, Method: Composition-based stats.
Identities = 67/175 (38%), Positives = 105/175 (60%), Gaps = 7/175 (4%)
Query: 12 SYQCRSLDRKIAFLDPAVVN---FNNQLSKEKEIDDYLFNALVKQNGYDHILLPYLSHHH 68
+ +CR+ K+ FLDP +VN EKE+ DYL+ + VK + ILLPY H
Sbjct: 602 ALECRTTHNKLGFLDPQIVNSTKIEGGEKSEKEVLDYLYTSFVKLQDMNTILLPYHFKPH 661
Query: 69 WILFVINIDDSKICVYDSLRKGTDNYQTIMNALNRAYVKYRRSKRTYGRCAIDATSFRIF 128
WIL I+++DSKI V D +R +Q++++ L++A VKY++ + + C + +FR++
Sbjct: 662 WILLAIHLNDSKIVVMDGMRTPQAKFQSLVDTLDKALVKYKK-RIQHAPC---SNTFRVW 717
Query: 129 ENQYIYRQPALTNLCGMYVMWYMLCFVESGHLLPRNAEKLGLETSEMLPHVFTAL 183
+ Y RQ T+ CG YVM +M F+E G+ ++EKL L TS++LPHV +L
Sbjct: 718 CHPYCSRQDPGTSTCGFYVMKFMRVFMEDGNWNITDSEKLKLPTSKLLPHVCFSL 772
>Os11g0646232
Length = 457
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 105/175 (60%), Gaps = 6/175 (3%)
Query: 14 QCRSLDRKIAFLDPAVVNFNNQLSKE---KEIDDYLFNALVKQNGYDHILLPYLSHHHWI 70
+CR+ K+ FLDP +VN N + E +E+ +YL+ + VK + ILLPY HWI
Sbjct: 236 ECRASHNKLGFLDPQIVNSLNIEAGEWSSEEVLNYLYTSFVKLQDMNTILLPYHFKPHWI 295
Query: 71 LFVINIDDSKICVYDSLRKGTDNYQTIMNALNRAYVKYRRSKRTYGRCAIDATSFRIFEN 130
L I+++DSKI V D +RK NYQ++++ L++A VKY++ + C F+++ +
Sbjct: 296 LIAIHLNDSKIVVMDGMRKPQANYQSLIDILDKALVKYKKKSIRHAPC---ENKFQVWCH 352
Query: 131 QYIYRQPALTNLCGMYVMWYMLCFVESGHLLPRNAEKLGLETSEMLPHVFTALTD 185
Y RQ T+ CG YVM +M F+E G+ +AEKL L TS++LPHV L +
Sbjct: 353 PYCSRQDPGTSTCGFYVMRFMWVFMEDGNWNITDAEKLKLPTSKLLPHVCLGLAE 407
>Os07g0267400 Peptidase C48, SUMO/Sentrin/Ubl1 family protein
Length = 931
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 96/179 (53%), Gaps = 27/179 (15%)
Query: 11 CSYQCRSLDRKIAFLDPAVVNFNN--QLS--KEKEIDDYLFNALVKQNGYDHILLPYLSH 66
+ +CR+ K+ FLDP ++N N QL E+ + DY+
Sbjct: 728 AALECRTTHGKLGFLDPQIINSRNIDQLGDKSEQAVVDYV-------------------- 767
Query: 67 HHWILFVINIDDSKICVYDSLRKGTDNYQTIMNALNRAYVKYRRSKRTYGRCAIDATSFR 126
HWIL VI+++DSKI V+D LR +Q++++ LN+A V+Y K+ R A A +FR
Sbjct: 768 PHWILLVIHLNDSKIVVFDGLRTPQAKFQSVIDTLNKALVRY---KKKCIRHAPRANTFR 824
Query: 127 IFENQYIYRQPALTNLCGMYVMWYMLCFVESGHLLPRNAEKLGLETSEMLPHVFTALTD 185
++ + Y RQ T+ CG Y+M +M F+E + +A+KL L TS++LPH L +
Sbjct: 825 VWAHPYCLRQDPGTSTCGFYLMRFMSIFMEDNNWNIMDAKKLKLPTSKLLPHACFGLAE 883
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.140 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,836,354
Number of extensions: 216101
Number of successful extensions: 807
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 815
Number of HSP's successfully gapped: 7
Length of query: 185
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 90
Effective length of database: 12,075,471
Effective search space: 1086792390
Effective search space used: 1086792390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 153 (63.5 bits)