BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0573100 Os09g0573100|AK121232
         (222 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0573100  Ubiquitin domain containing protein                 390   e-109

>Os09g0573100 Ubiquitin domain containing protein
          Length = 222

 Score =  390 bits (1001), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/208 (93%), Positives = 195/208 (93%)

Query: 15  VTLRAVGPSRPTTLRLPPFISVADLRRHIAHDRHLPQDRLRLVLRGRNLPCQDDAHVNLR 74
           VTLRAVGPSRPTTLRLPPFISVADLRRHIAHDRHLPQDRLRLVLRGRNLPCQDDAHVNLR
Sbjct: 15  VTLRAVGPSRPTTLRLPPFISVADLRRHIAHDRHLPQDRLRLVLRGRNLPCQDDAHVNLR 74

Query: 75  HGDSLIVAVAPKPPANHLRXXXXXXXXXXXXXLKFKIPETTTWWKRKFFIFLRDKLRLPD 134
           HGDSLIVAVAPKPPANHLR             LKFKIPETTTWWKRKFFIFLRDKLRLPD
Sbjct: 75  HGDSLIVAVAPKPPANHLRDGDGDDDDDEEEELKFKIPETTTWWKRKFFIFLRDKLRLPD 134

Query: 135 ILLMVLFSLGIKAWVLIAMWFLFAPIAQMYDVGPLFILGTGFLVILCNLGRRQQGDVSAY 194
           ILLMVLFSLGIKAWVLIAMWFLFAPIAQMYDVGPLFILGTGFLVILCNLGRRQQGDVSAY
Sbjct: 135 ILLMVLFSLGIKAWVLIAMWFLFAPIAQMYDVGPLFILGTGFLVILCNLGRRQQGDVSAY 194

Query: 195 SIFNEDFRELPGTLNAERIDRDIRAGQF 222
           SIFNEDFRELPGTLNAERIDRDIRAGQF
Sbjct: 195 SIFNEDFRELPGTLNAERIDRDIRAGQF 222



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.330    0.146    0.466 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,302,452
Number of extensions: 294600
Number of successful extensions: 814
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 814
Number of HSP's successfully gapped: 1
Length of query: 222
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 125
Effective length of database: 11,971,043
Effective search space: 1496380375
Effective search space used: 1496380375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 154 (63.9 bits)