BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0565400 Os09g0565400|AK067821
(595 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os09g0565400 Lipoprotein, type 6 family protein 831 0.0
>Os09g0565400 Lipoprotein, type 6 family protein
Length = 595
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/595 (73%), Positives = 439/595 (73%)
Query: 1 MADDGDAVLSDVDEEDXXXXXXXXXXXXXXXXXXXXXXXXXXHAQAQRLHDXXXXXXXXX 60
MADDGDAVLSDVDEED HAQAQRLHD
Sbjct: 1 MADDGDAVLSDVDEEDPLPPPPPPSTSSSQKSPSPSQPQPQPHAQAQRLHDLAAELEEER 60
Query: 61 XXXXXXXXXXXXXXXXXXXVKALAQNVLRKHDDLKTEASTASSMLTSGFERIXXXXXXXX 120
VKALAQNVLRKHDDLKTEASTASSMLTSGFERI
Sbjct: 61 RLRRKAEESLAEAEKRSERVKALAQNVLRKHDDLKTEASTASSMLTSGFERISAKASPSA 120
Query: 121 XXXXXXXXTSQKYSSGLPAIAYGVLKRANDIVDDLLSQIXXXXXXXXXXXEQMEHRNYQI 180
TSQKYSSGLPAIAYGVLKRANDIVDDLLSQI EQMEHRNYQI
Sbjct: 121 AASPAPLPTSQKYSSGLPAIAYGVLKRANDIVDDLLSQIDAANRDRDRAREQMEHRNYQI 180
Query: 181 XXXXXXXXXXXXXXXXHCXXXXXXXXXXXAEISDLRNNLAFLETKLDAQRPVLADQIACA 240
HC AEISDLRNNLAFLETKLDAQRPVLADQIACA
Sbjct: 181 AIEVSELEASLASRSAHCDSLSKSLSDKDAEISDLRNNLAFLETKLDAQRPVLADQIACA 240
Query: 241 SKVYDEIREXXXXXXXXXXXXXXXXXFVWKETDVEESLKVSLEGTKMAYDLATTALHKVG 300
SKVYDEIRE FVWKETDVEESLKVSLEGTKMAYDLATTALHKVG
Sbjct: 241 SKVYDEIREVVKLVDADAASALSDSVFVWKETDVEESLKVSLEGTKMAYDLATTALHKVG 300
Query: 301 AWVDKKESKVRDLEARVDELLREKEHIGVLLRSALQSNTSEVLKVAEDGLREAGIEVGLK 360
AWVDKKESKVRDLEARVDELLREKEHIGVLLRSALQSNTSEVLKVAEDGLREAGIEVGLK
Sbjct: 301 AWVDKKESKVRDLEARVDELLREKEHIGVLLRSALQSNTSEVLKVAEDGLREAGIEVGLK 360
Query: 361 ERREHRPGSMEKDEVYTLAGELENSMKESQVKIVELQHLVEALRAESGLLRTRLEGQEKE 420
ERREHRPGSMEKDEVYTLAGELENSMKESQVKIVELQHLVEALRAESGLLRTRLEGQEKE
Sbjct: 361 ERREHRPGSMEKDEVYTLAGELENSMKESQVKIVELQHLVEALRAESGLLRTRLEGQEKE 420
Query: 421 IAQLRKQIKHLEEKERVANESVEGLMMDVTAAEEEIKRWKMXXXXXXXXGKAIEQEFETQ 480
IAQLRKQIKHLEEKERVANESVEGLMMDVTAAEEEIKRWKM GKAIEQEFETQ
Sbjct: 421 IAQLRKQIKHLEEKERVANESVEGLMMDVTAAEEEIKRWKMAAEEEAEAGKAIEQEFETQ 480
Query: 481 LSSLNKELDEAKQAMXXXXXXXXXXXXTXXXXXXXXXXXEKSLKLADMRSTRLRERLEEI 540
LSSLNKELDEAKQAM T EKSLKLADMRSTRLRERLEEI
Sbjct: 481 LSSLNKELDEAKQAMLELENKLKFKEETAAAAMAARDAAEKSLKLADMRSTRLRERLEEI 540
Query: 541 NRQLEESDNRRDSSNRNGHRYMCWPWQWLGLNYVRLPPTEADQTSNEMELSEPLI 595
NRQLEESDNRRDSSNRNGHRYMCWPWQWLGLNYVRLPPTEADQTSNEMELSEPLI
Sbjct: 541 NRQLEESDNRRDSSNRNGHRYMCWPWQWLGLNYVRLPPTEADQTSNEMELSEPLI 595
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.128 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,512,195
Number of extensions: 382868
Number of successful extensions: 1634
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1626
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 489
Effective length of database: 11,501,117
Effective search space: 5624046213
Effective search space used: 5624046213
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 159 (65.9 bits)