BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0558200 Os09g0558200|AK103673
         (336 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0558200  Homeodomain-like containing protein                 589   e-169

>Os09g0558200 Homeodomain-like containing protein
          Length = 336

 Score =  589 bits (1519), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 295/315 (93%), Positives = 295/315 (93%)

Query: 22  KRDEWSESGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAHEVSAHCAMENAAATGKPGSST 81
           KRDEWSESGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAHEVSAHCAMENAAATGKPGSST
Sbjct: 22  KRDEWSESGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAHEVSAHCAMENAAATGKPGSST 81

Query: 82  AKTPNQCKNKIESMKKRYXXXXXXXXXXXXXXXXXXXXWRFFARMDGLLKGPAGSGQPQA 141
           AKTPNQCKNKIESMKKRY                    WRFFARMDGLLKGPAGSGQPQA
Sbjct: 82  AKTPNQCKNKIESMKKRYRAESAAAARAGPAAAGAGPSWRFFARMDGLLKGPAGSGQPQA 141

Query: 142 ELSNSIDLRAPPPAKVEVDVDADFVSQLADAGPGALSELVSAYANGSIQEKLDKVENSGH 201
           ELSNSIDLRAPPPAKVEVDVDADFVSQLADAGPGALSELVSAYANGSIQEKLDKVENSGH
Sbjct: 142 ELSNSIDLRAPPPAKVEVDVDADFVSQLADAGPGALSELVSAYANGSIQEKLDKVENSGH 201

Query: 202 VEGRAAESDVNVSSPRIKEANEDAEEVDKVWDMSKKRKNTEFDIAKSIELLASSFLKIER 261
           VEGRAAESDVNVSSPRIKEANEDAEEVDKVWDMSKKRKNTEFDIAKSIELLASSFLKIER
Sbjct: 202 VEGRAAESDVNVSSPRIKEANEDAEEVDKVWDMSKKRKNTEFDIAKSIELLASSFLKIER 261

Query: 262 ARMDLYRETERMRVEAEIKKGEMELKRTEIMAKTHLQIAKLFAKRLKECSSKTGGSSSVT 321
           ARMDLYRETERMRVEAEIKKGEMELKRTEIMAKTHLQIAKLFAKRLKECSSKTGGSSSVT
Sbjct: 262 ARMDLYRETERMRVEAEIKKGEMELKRTEIMAKTHLQIAKLFAKRLKECSSKTGGSSSVT 321

Query: 322 AEVDNHAKKGENGSG 336
           AEVDNHAKKGENGSG
Sbjct: 322 AEVDNHAKKGENGSG 336



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.126    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,071,479
Number of extensions: 377724
Number of successful extensions: 1374
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1371
Number of HSP's successfully gapped: 4
Length of query: 336
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 235
Effective length of database: 11,762,187
Effective search space: 2764113945
Effective search space used: 2764113945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 156 (64.7 bits)